Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
baseCode baseCode 1.1.17 jar The Apache Software License, Version 2.0
colt colt 1.2.0 jar -
com.fasterxml.jackson.core jackson-annotations 2.15.2 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-core 2.15.2 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-databind 2.15.2 jar The Apache Software License, Version 2.0
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0
com.google.guava guava 32.0.0-jre jar Apache License, Version 2.0
com.mysql mysql-connector-j 8.0.32 jar The GNU General Public License, v2 with Universal FOSS Exception, v1.0
com.zaxxer HikariCP 4.0.3 jar The Apache Software License, Version 2.0
commons-beanutils commons-beanutils 1.9.4 jar Apache License, Version 2.0
commons-fileupload commons-fileupload 1.5 jar Apache-2.0
commons-io commons-io 2.13.0 jar Apache-2.0
commons-logging commons-logging 1.2 jar The Apache Software License, Version 2.0
commons-logging commons-logging-api 1.1 jar -
gemma gemma-core 1.30.0-SNAPSHOT jar The Apache Software License, Version 2.0
io.micrometer micrometer-core 1.11.0 jar The Apache Software License, Version 2.0
io.micrometer micrometer-registry-jmx 1.11.0 jar The Apache Software License, Version 2.0
io.swagger.core.v3 swagger-annotations 2.2.11 jar Apache License 2.0
io.swagger.core.v3 swagger-core 2.2.11 jar Apache License 2.0
io.swagger.core.v3 swagger-integration 2.2.11 jar Apache License 2.0
io.swagger.core.v3 swagger-jaxrs2 2.2.11 jar Apache License 2.0
io.swagger.core.v3 swagger-models 2.2.11 jar Apache License 2.0
javax.resource javax.resource-api 1.7.1 jar CDDL + GPLv2 with classpath exception
javax.ws.rs javax.ws.rs-api 2.0.1 jar CDDL 1.1GPL2 w/ CPE
net.sf.ehcache ehcache-core 2.4.3 jar The Apache Software License, Version 2.0
org.antlr antlr4-runtime 4.9.3 jar The BSD License
org.apache.ant ant 1.10.13 jar The Apache Software License, Version 2.0
org.apache.commons commons-collections4 4.4 jar Apache License, Version 2.0
org.apache.commons commons-configuration2 2.8.0 jar Apache License, Version 2.0
org.apache.commons commons-lang3 3.12.0 jar Apache License, Version 2.0
org.apache.commons commons-text 1.10.0 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-1.2-api 2.20.0 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-core 2.20.0 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-jcl 2.20.0 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-jul 2.20.0 jar Apache License, Version 2.0
org.aspectj aspectjweaver 1.9.19 jar Eclipse Public License - v 2.0
org.glassfish.jersey.core jersey-server 2.25.1 jar CDDL+GPL License
org.glassfish.jersey.ext jersey-spring3 2.25.1 jar CDDL+GPL License
org.glassfish.jersey.media jersey-media-json-jackson 2.25.1 jar CDDL+GPL License
org.hibernate hibernate-core 4.2.21.Final jar GNU Lesser General Public License
org.hibernate hibernate-ehcache 4.2.21.Final jar GNU Lesser General Public License
org.jfree jfreechart 1.5.4 jar GNU Lesser General Public Licence
org.projectlombok lombok 1.18.26 jar The MIT License
org.springframework spring-beans 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context-support 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-core 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-jdbc 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-orm 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-tx 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-webmvc 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-acl 3.2.10.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-core 3.2.10.RELEASE jar The Apache Software License, Version 2.0
pavlab gemma-gsec 0.0.12 jar The Apache Software License, Version 2.0
xerces xercesImpl 2.12.2 jar The Apache Software License, Version 2.0
xml-apis xml-apis 1.4.01 jar The Apache Software License, Version 2.0The SAX LicenseThe W3C License

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
commons-collections commons-collections 3.2.2 jar Apache License, Version 2.0
io.swagger.core.v3 swagger-jaxrs2-servlet-initializer-v2 2.2.11 jar Apache License 2.0
org.apache.logging.log4j log4j-slf4j-impl 2.20.0 jar Apache License, Version 2.0
org.dom4j dom4j 2.1.4 jar Plexus
org.glassfish.jersey.containers jersey-container-servlet 2.25.1 jar CDDL+GPL License
org.springframework spring-aop 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-aspects 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-expression 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-config 3.2.10.RELEASE jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Classifier Type Licenses
com.h2database h2 2.1.214 - jar MPL 2.0EPL 1.0
gemma gemma-core 1.30.0-SNAPSHOT tests test-jar The Apache Software License, Version 2.0
io.takari.junit takari-cpsuite 1.2.7 - jar The Eclipse Public License, Version 1.0
junit junit 4.13.2 - jar Eclipse Public License 1.0
org.assertj assertj-core 3.24.2 - jar Apache License, Version 2.0
org.glassfish.jersey.test-framework jersey-test-framework-core 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.test-framework.providers jersey-test-framework-provider-inmemory 2.25.1 - jar CDDL+GPL License
org.mockito mockito-core 4.11.0 - jar The MIT License
org.mockito mockito-inline 4.11.0 - jar The MIT License
org.springframework spring-test 3.2.18.RELEASE - jar The Apache Software License, Version 2.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Classifier Type Licenses
RoSuDA JRIEngine 0.5-0 - jar -
antlr antlr 2.7.7 - jar BSD License
aopalliance aopalliance 1.0 - jar Public Domain
asm asm 3.3.1 - jar BSD
asm asm-commons 3.3.1 - jar BSD
asm asm-tree 3.3.1 - jar BSD
com.fasterxml.jackson.dataformat jackson-dataformat-yaml 2.15.1 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.datatype jackson-datatype-jsr310 2.15.1 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.jaxrs jackson-jaxrs-base 2.8.4 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.jaxrs jackson-jaxrs-json-provider 2.8.4 - jar The Apache Software License, Version 2.0
com.fasterxml.jackson.module jackson-module-jaxb-annotations 2.8.4 - jar The Apache Software License, Version 2.0
com.github.fommil jniloader 1.1 - jar LGPL
com.github.fommil.netlib all 1.1.2 - pom BSD 3 Clause
com.github.fommil.netlib core 1.1.2 - jar BSD 3 Clause
com.github.fommil.netlib native_ref-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib native_system-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-x86_64 1.1 natives jar BSD 3 Clause
com.google.errorprone error_prone_annotations 2.18.0 - jar Apache 2.0
com.google.guava failureaccess 1.0.1 - jar The Apache Software License, Version 2.0
com.google.guava listenablefuture 9999.0-empty-to-avoid-conflict-with-guava - jar The Apache Software License, Version 2.0
com.google.j2objc j2objc-annotations 2.8 - jar Apache License, Version 2.0
com.google.protobuf protobuf-java 3.21.9 - jar BSD-3-Clause
com.googlecode.javaewah JavaEWAH 0.7.9 - jar Apache 2
com.googlecode.matrix-toolkits-java mtj 1.0.4 - jar GNU Lesser General Public License
com.opencsv opencsv 5.7.1 - jar Apache 2
com.zaxxer SparseBitSet 1.2 - jar The Apache Software License, Version 2.0
commons-codec commons-codec 1.15 - jar Apache License, Version 2.0
commons-net commons-net 3.9.0 - jar Apache License, Version 2.0
concurrent concurrent 1.3.4 - jar Public domain, Sun Microsoystems
io.dropwizard.metrics metrics-core 4.2.18 - jar Apache License 2.0
io.dropwizard.metrics metrics-jmx 4.2.18 - jar Apache License 2.0
io.github.classgraph classgraph 4.8.154 - jar The MIT License (MIT)
io.micrometer micrometer-commons 1.11.0 - jar The Apache Software License, Version 2.0
io.micrometer micrometer-observation 1.11.0 - jar The Apache Software License, Version 2.0
jakarta-regexp jakarta-regexp 1.4 - jar -
jakarta.activation jakarta.activation-api 1.2.1 - jar EDL 1.0
jakarta.validation jakarta.validation-api 2.0.2 - jar Apache License 2.0
jakarta.xml.bind jakarta.xml.bind-api 2.3.2 - jar Eclipse Distribution License - v 1.0
javax.activation javax.activation-api 1.2.0 - jar CDDL/GPLv2+CE
javax.annotation javax.annotation-api 1.2 - jar CDDL + GPLv2 with classpath exception
javax.transaction javax.transaction-api 1.3 - jar CDDL + GPLv2 with classpath exception
javax.transaction jta 1.1 - jar -
javax.validation validation-api 1.1.0.Final - jar The Apache Software License, Version 2.0
javax.xml.bind jaxb-api 2.3.1 - jar CDDL 1.1GPL2 w/ CPE
jaxen jaxen 1.2.0 - jar BSD License 2.0
jboss jboss-ejb3x 4.2.2.GA - jar -
mx4j mx4j 3.0.2 - jar The Apache Software License, Version 2.0
net.java.dev.javacc javacc 5.0 - jar Berkeley Software Distribution (BSD) License
net.sourceforge.f2j arpack_combined_all 0.1 - jar The BSD License
obo org.geneontology 1.002 - jar -
org.apache.ant ant-launcher 1.10.13 - jar The Apache Software License, Version 2.0
org.apache.commons commons-csv 1.10.0 - jar Apache-2.0
org.apache.commons commons-math3 3.6.1 - jar Apache License, Version 2.0
org.apache.httpcomponents httpclient 4.5.14 - jar Apache License, Version 2.0
org.apache.httpcomponents httpcore 4.4.16 - jar Apache License, Version 2.0
org.apache.jena jena-arq 2.9.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-core 2.7.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-iri 0.9.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-larq 1.0.0-incubating - jar The Apache Software License, Version 2.0
org.apache.logging.log4j log4j-api 2.20.0 - jar Apache License, Version 2.0
org.apache.lucene lucene-analyzers 3.6.2 - jar Apache 2
org.apache.lucene lucene-core 3.6.2 - jar Apache 2
org.apache.lucene lucene-highlighter 3.6.2 - jar Apache 2
org.apache.lucene lucene-memory 3.6.2 - jar Apache 2
org.apache.lucene lucene-queries 3.6.2 - jar Apache 2
org.apache.lucene lucene-queryparser 3.6.2 - jar Apache 2
org.apache.poi poi 5.2.3 - jar Apache License, Version 2.0
org.apache.velocity velocity-engine-core 2.3 - jar Apache License, Version 2.0
org.checkerframework checker-qual 3.33.0 - jar The MIT License
org.glassfish.hk2 class-model 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 config-types 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-api 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-config 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-core 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-locator 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-runlevel 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 hk2-utils 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 osgi-resource-locator 1.0.1 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2 spring-bridge 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external aopalliance-repackaged 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external asm-all-repackaged 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.hk2.external javax.inject 2.5.0-b32 - jar CDDL + GPLv2 with classpath exception
org.glassfish.jersey.bundles.repackaged jersey-guava 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.containers jersey-container-servlet-core 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.core jersey-client 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.core jersey-common 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.ext jersey-entity-filtering 2.25.1 - jar CDDL+GPL License
org.glassfish.jersey.media jersey-media-jaxb 2.25.1 - jar CDDL+GPL License
org.hibernate.common hibernate-commons-annotations 4.0.2.Final - jar GNU LESSER GENERAL PUBLIC LICENSE
org.hibernate.javax.persistence hibernate-jpa-2.0-api 1.0.1.Final - jar null
org.jboss.logging jboss-logging 3.1.0.GA - jar GNU Lesser General Public License, version 2.1
org.jboss.spec.javax.transaction jboss-transaction-api_1.1_spec 1.0.1.Final - jar Common Development and Distribution LicenseGNU General Public License, Version 2 with the Classpath Exception
org.json json 20230227 - jar Public Domain
org.jvnet tiger-types 1.4 - jar -
org.rosuda.REngine REngine 2.1.0 - jar LGPL v2.1
org.slf4j jcl-over-slf4j 1.7.36 - jar Apache License, Version 2.0
org.slf4j slf4j-api 1.7.36 - jar MIT License
org.springframework spring-web 3.2.18.RELEASE - jar The Apache Software License, Version 2.0
org.springframework.retry spring-retry 1.0.3.RELEASE - jar Apache 2.0
org.springframework.security spring-security-web 3.2.10.RELEASE - jar The Apache Software License, Version 2.0
org.yaml snakeyaml 2.0 - jar Apache License, Version 2.0
pull-parser pull-parser 2.1.10 - jar Indiana University Extreme! Lab Software License
ubc.chibi.compass-fork compass-fork 1.2.0 - jar Apache 2
xpp3 xpp3 1.1.4c - jar Indiana University Extreme! Lab Software License, vesion 1.1.1Public DomainApache Software License, version 1.1

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
RoSuDA JRI 0.5-0 jar -
com.sun.mail javax.mail 1.6.2 jar CDDL/GPLv2+CE
javax.activation activation 1.1 jar Common Development and Distribution License (CDDL) v1.0
org.hdrhistogram HdrHistogram 2.1.12 jar Public Domain, per Creative Commons CC0BSD-2-Clause
org.javassist javassist 3.29.2-GA jar MPL 1.1LGPL 2.1Apache License 2.0
org.latencyutils LatencyUtils 2.0.3 jar Public Domain, per Creative Commons CC0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
net.bytebuddy byte-buddy 1.12.19 jar Apache License, Version 2.0
net.bytebuddy byte-buddy-agent 1.12.19 jar Apache License, Version 2.0
org.hamcrest hamcrest-core 1.3 jar New BSD License
org.objenesis objenesis 3.3 jar Apache License, Version 2.0

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupId ArtifactId Version Type Licenses
javax.servlet javax.servlet-api 3.1.0 jar CDDL + GPLv2 with classpath exception

system

The following is a list of system dependencies for this project. These dependencies are required to compile the application:

GroupId ArtifactId Version Type Licenses
com.sun tools 1.8.0 jar -

Project Dependency Graph

Dependency Tree

Licenses

GNU LESSER GENERAL PUBLIC LICENSE: Hibernate Commons Annotations

The BSD License: ANTLR 4 Runtime, Fortran to Java ARPACK

Eclipse Public License 1.0: JUnit

The Eclipse Public License, Version 1.0: takari-cpsuite

Plexus: dom4j

GPL2 w/ CPE: javax.ws.rs-api, jaxb-api

The GNU General Public License, v2 with Universal FOSS Exception, v1.0: MySQL Connector/J

CDDL/GPLv2+CE: JavaBeans Activation Framework API jar, JavaMail API

Apache 2: Compass, JavaEWAH, Lucene Common Analyzers, Lucene Core, Lucene Highlighter, Lucene Memory, Lucene Queries, Lucene Query Parser, opencsv

BSD: ASM Commons, ASM Core, ASM Tree

Public domain, Sun Microsoystems: Dough Lea's util.concurrent package

BSD 3 Clause: all, core, native_ref-java, native_system-java, netlib-native_ref-linux-armhf, netlib-native_ref-linux-i686, netlib-native_ref-linux-x86_64, netlib-native_ref-osx-x86_64, netlib-native_ref-win-i686, netlib-native_ref-win-x86_64, netlib-native_system-linux-armhf, netlib-native_system-linux-i686, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, netlib-native_system-win-i686, netlib-native_system-win-x86_64

Unknown: JRI, JRIEngine, Java Transaction API, Type arithmetic library for Java5, colt, jakarta-regexp, jboss-ejb3x

LGPL: JniLoader

The MIT License: Checker Qual, Project Lombok, mockito-core, mockito-inline

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Apache-2.0: Apache Commons CSV, Apache Commons FileUpload, Apache Commons IO

MPL 1.1: Javassist

BSD-3-Clause: Protocol Buffers [Core]

The W3C License: XML Commons External Components XML APIs

Indiana University Extreme! Lab Software License, vesion 1.1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Public Domain: AOP alliance, JSON in Java, MXP1: Xml Pull Parser 3rd Edition (XPP3)

Indiana University Extreme! Lab Software License: XPP - XML Pull Parser

The MIT License (MIT): ClassGraph

Eclipse Distribution License - v 1.0: jakarta.xml.bind-api

CDDL + GPLv2 with classpath exception: ASM library repackaged as OSGi bundle, Class Model for Hk2, HK2 API module, HK2 Implementation Utilities, HK2 Spring Bridge, HK2 config types, HK2 configuration module, HK2 core module, HK2 module of HK2 itself, Java Servlet API, OSGi resource locator bundle - used by various API providers that rely on META-INF/services mechanism to locate providers., Run Level Service, ServiceLocator Default Implementation, aopalliance version 1.0 repackaged as a module, javax.annotation API, javax.inject:1 as OSGi bundle, javax.resource API, javax.transaction API

Eclipse Public License - v 2.0: AspectJ Weaver

The Apache Software License, Version 2.0: Apache Ant Core, Apache Ant Launcher, Apache Commons Logging, Bean Validation API, Ehcache Core, FindBugs-jsr305, Gemma Core, Gemma REST, Guava InternalFutureFailureAccess and InternalFutures, Guava ListenableFuture only, HikariCP, Jackson datatype: JSR310, Jackson module: JAXB-annotations, Jackson-JAXRS-JSON, Jackson-JAXRS-base, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, LARQ, MX4J, SparseBitSet, Spring AOP, Spring Aspects, Spring Beans, Spring Context, Spring Context Support, Spring Core, Spring Expression Language (SpEL), Spring JDBC, Spring Object/Relational Mapping, Spring TestContext Framework, Spring Transaction, Spring Web, Spring Web MVC, XML Commons External Components XML APIs, Xerces2-j, baseCode, gsec, jackson-databind, jena-arq, jena-core, jena-iri, micrometer-commons, micrometer-core, micrometer-observation, micrometer-registry-jmx, spring-security-acl, spring-security-config, spring-security-core, spring-security-web

CDDL+GPL License: jersey-container-servlet, jersey-container-servlet-core, jersey-core-client, jersey-core-common, jersey-core-server, jersey-ext-entity-filtering, jersey-media-jaxb, jersey-media-json-jackson, jersey-repackaged-guava, jersey-spring3, jersey-test-framework-core, jersey-test-framework-provider-inmemory

Unnamed: JPA 2.0 API

Apache 2.0: Spring Retry, error-prone annotations

MIT License: SLF4J API Module

New BSD License: Hamcrest Core

Public Domain, per Creative Commons CC0: HdrHistogram, LatencyUtils

Apache License 2.0: Jakarta Bean Validation API, Javassist, Metrics Core, Metrics Integration with JMX, swagger-annotations, swagger-core, swagger-integration, swagger-jaxrs2, swagger-jaxrs2-servlet-initializer-v2, swagger-models

BSD License: AntLR Parser Generator

Apache License, Version 2.0: Apache Commons BeanUtils, Apache Commons Codec, Apache Commons Collections, Apache Commons Configuration, Apache Commons Lang, Apache Commons Math, Apache Commons Net, Apache Commons Text, Apache HttpClient, Apache HttpCore, Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Commons Logging Bridge, Apache Log4j Core, Apache Log4j JUL Adapter, Apache Log4j SLF4J Binding, Apache POI - Common, Apache Velocity - Engine, AssertJ Core, Byte Buddy (without dependencies), Byte Buddy agent, Guava: Google Core Libraries for Java, J2ObjC Annotations, JCL 1.2 implemented over SLF4J, Objenesis, SnakeYAML

GNU General Public License, Version 2 with the Classpath Exception: Java Transaction API

EPL 1.0: H2 Database Engine

MPL 2.0: H2 Database Engine

CDDL 1.1: javax.ws.rs-api, jaxb-api

The SAX License: XML Commons External Components XML APIs

Common Development and Distribution License: Java Transaction API

BSD-2-Clause: HdrHistogram

LGPL v2.1: REngine Java interface to R

GNU Lesser General Public License: A Hibernate O/RM Module, Matrix Toolkits for Java

GNU Lesser General Public License, version 2.1: JBoss Logging 3

EDL 1.0: JavaBeans Activation Framework API jar

Berkeley Software Distribution (BSD) License: JavaCC

LGPL 2.1: Javassist

GNU Lesser General Public Licence: JFreeChart

Apache Software License, version 1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

BSD License 2.0: jaxen

Dependency File Details

Filename Size Entries Classes Packages Java Version Debug Information Sealed
JRI-0.5-0.jar 71.8 kB 15 9 1 1.4 Yes No
JRIEngine-0.5-0.jar 9.7 kB 5 2 1 1.4 Yes No
antlr-2.7.7.jar 445.3 kB 239 224 12 1.2 Yes No
aopalliance-1.0.jar 4.5 kB 15 9 2 1.3 Yes No
asm-3.3.1.jar 43.6 kB 24 23 2 1.2 No No
asm-commons-3.3.1.jar 38.3 kB 25 24 1 1.2 No No
asm-tree-3.3.1.jar 21.5 kB 28 27 1 1.2 No No
baseCode-1.1.17.jar 2.2 MB 297 254 28 1.8 Yes No
colt-1.2.0.jar 581.9 kB 623 593 24 1.2 No No
jackson-annotations-2.15.2.jar 75.6 kB 86 73 2 - Yes No
jackson-core-2.15.2.jar 549.2 kB 250 186 15 - Yes No
jackson-databind-2.15.2.jar 1.6 MB 816 777 24 - Yes No
jackson-dataformat-yaml-2.15.1.jar 54.6 kB 43 21 4 - Yes No
jackson-datatype-jsr310-2.15.1.jar 122.9 kB 82 59 7 - Yes No
jackson-jaxrs-base-2.8.4.jar 30.2 kB 32 16 4 1.7 Yes No
jackson-jaxrs-json-provider-2.8.4.jar 15.8 kB 27 9 2 1.7 Yes No
jackson-module-jaxb-annotations-2.8.4.jar 34.6 kB 30 12 3 1.7 Yes No
jniloader-1.1.jar 8.7 kB 13 2 1 1.6 Yes No
all-1.1.2.pom 4.3 kB - - - - - -
core-1.1.2.jar 164.4 kB 17 6 1 1.6 Yes No
native_ref-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
native_system-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
netlib-native_ref-linux-armhf-1.1-natives.jar 1.2 MB 8 0 0 - No No
netlib-native_ref-linux-i686-1.1-natives.jar 1.5 MB 8 0 0 - No No
netlib-native_ref-linux-x86_64-1.1-natives.jar 1.7 MB 8 0 0 - No No
netlib-native_ref-osx-x86_64-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-i686-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-x86_64-1.1-natives.jar 2.3 MB 11 0 0 - No No
netlib-native_system-linux-armhf-1.1-natives.jar 310.9 kB 11 0 0 - No No
netlib-native_system-linux-i686-1.1-natives.jar 435.4 kB 11 0 0 - No No
netlib-native_system-linux-x86_64-1.1-natives.jar 458.6 kB 11 0 0 - No No
netlib-native_system-osx-x86_64-1.1-natives.jar 554 kB 11 0 0 - No No
netlib-native_system-win-i686-1.1-natives.jar 561.5 kB 11 0 0 - No No
netlib-native_system-win-x86_64-1.1-natives.jar 637.4 kB 11 0 0 - No No
jsr305-3.0.2.jar 19.9 kB 46 35 3 1.5 Yes No
error_prone_annotations-2.18.0.jar 16 kB 38 26 2 1.8 Yes No
failureaccess-1.0.1.jar 4.6 kB 15 2 1 1.7 Yes No
guava-32.0.0-jre.jar 3 MB 2052 2012 18 1.8 Yes No
listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar 2.2 kB 7 0 0 - No No
j2objc-annotations-2.8.jar 9.3 kB 24 13 1 1.7 Yes No
protobuf-java-3.21.9.jar 1.7 MB 705 679 2 1.7 Yes No
JavaEWAH-0.7.9.jar 125.1 kB 81 69 3 1.6 Yes No
mtj-1.0.4.jar 269 kB 196 183 3 1.6 Yes No
h2-2.1.214.jar 2.5 MB 1031 1026 58 - Yes No
mysql-connector-j-8.0.32.jar 2.5 MB 1117 1065 29 1.8 Yes No
opencsv-5.7.1.jar 238.8 kB 195 156 15 1.8 Yes No
javax.mail-1.6.2.jar 659 kB 375 340 14 1.7 Yes No
HikariCP-4.0.3.jar 159.2 kB 95 76 9 - Yes No
SparseBitSet-1.2.jar 24.5 kB 25 15 1 1.5 Yes No
commons-beanutils-1.9.4.jar 246.9 kB 154 137 5 1.6 Yes No
commons-codec-1.15.jar 353.8 kB 253 106 7 1.7 Yes No
commons-collections-3.2.2.jar 588.3 kB 484 460 12 1.3 Yes No
commons-fileupload-1.5.jar 74.1 kB 74 56 6 1.6 Yes No
commons-io-2.13.0.jar 484 kB 355 329 14 1.8 Yes No
commons-logging-1.2.jar 61.8 kB 42 28 2 1.2 Yes No
commons-logging-api-1.1.jar 44.6 kB 29 20 2 1.1 Yes No
commons-net-3.9.0.jar 316.4 kB 229 197 20 1.8 Yes No
concurrent-1.3.4.jar 189.3 kB 230 221 2 1.1 No No
gemma-core-1.30.0-SNAPSHOT.jar 3.1 MB 1670 1341 144 1.8 Yes No
test-classes 0 kB - - - - - -
metrics-core-4.2.18.jar 126.4 kB 114 104 1 1.8 Yes No
metrics-jmx-4.2.18.jar 21.2 kB 30 19 1 1.8 Yes No
classgraph-4.8.154.jar 560.1 kB 291 262 14 - Yes No
micrometer-commons-1.11.0.jar 47.1 kB 50 36 6 1.8 Yes No
micrometer-core-1.11.0.jar 865.8 kB 600 530 45 - Yes No
micrometer-observation-1.11.0.jar 68 kB 70 55 6 1.8 Yes No
micrometer-registry-jmx-1.11.0.jar 9.2 kB 11 3 1 1.8 Yes No
swagger-annotations-2.2.11.jar 42.1 kB 76 50 13 1.8 Yes No
swagger-core-2.2.11.jar 209.7 kB 134 115 6 1.8 Yes No
swagger-integration-2.2.11.jar 39.9 kB 43 28 2 1.8 Yes No
swagger-jaxrs2-2.2.11.jar 92 kB 52 33 6 1.8 Yes No
swagger-jaxrs2-servlet-initializer-v2-2.2.11.jar 11 kB 18 1 1 1.8 Yes No
swagger-models-2.2.11.jar 133 kB 92 66 13 1.8 Yes No
takari-cpsuite-1.2.7.jar 22.5 kB 32 20 1 1.7 Yes No
jakarta-regexp-1.4.jar 28.6 kB 22 17 1 1.1 No No
jakarta.activation-api-1.2.1.jar 44.4 kB 42 31 1 1.5 Yes No
jakarta.validation-api-2.0.2.jar 91.9 kB 160 143 9 1.8 Yes No
jakarta.xml.bind-api-2.3.2.jar 115.5 kB 137 111 7 - Yes No
activation-1.1.jar 63 kB 50 38 3 1.4 Yes No
javax.activation-api-1.2.0.jar 56.7 kB 41 31 1 1.5 Yes No
javax.annotation-api-1.2.jar 26.4 kB 29 15 3 1.6 Yes No
javax.resource-api-1.7.1.jar 69.9 kB 111 89 6 1.7 Yes No
javax.servlet-api-3.1.0.jar 95.8 kB 103 79 4 1.7 Yes No
javax.transaction-api-1.3.jar 28 kB 30 19 1 1.7 Yes No
jta-1.1.jar 15.1 kB 24 18 2 1.3 Yes No
validation-api-1.1.0.Final.jar 63.8 kB 122 106 8 1.6 Yes No
javax.ws.rs-api-2.0.1.jar 115.5 kB 139 125 5 1.6 Yes No
jaxb-api-2.3.1.jar 128.1 kB 136 111 7 - Yes No
jaxen-1.2.0.jar 232.5 kB 238 213 16 1.4 Yes No
jboss-ejb3x-4.2.2.GA.jar 20.4 kB 48 41 4 1.5 Yes No
junit-4.13.2.jar 384.6 kB 389 350 32 1.5 Yes No
mx4j-3.0.2.jar 409.5 kB 301 282 16 1.3 Yes No
byte-buddy-1.12.19.jar 4 MB 2742 2688 39 - Yes No
byte-buddy-agent-1.12.19.jar 256.4 kB 90 70 3 - Yes No
javacc-5.0.jar 298.6 kB 176 154 6 1.4 No No
ehcache-core-2.4.3.jar 1 MB 801 732 57 1.5 Yes No
arpack_combined_all-0.1.jar 1.2 MB 926 915 6 1.4 Yes No
org.geneontology-1.002.jar 307.3 kB 276 256 14 1.4 Yes Yes
antlr4-runtime-4.9.3.jar 336.7 kB 237 220 7 1.7 Yes No
ant-1.10.13.jar 2.3 MB 1257 1173 62 1.8 Yes No
ant-launcher-1.10.13.jar 20.6 kB 15 5 2 1.8 Yes No
commons-collections4-4.4.jar 751.9 kB 555 524 19 1.8 Yes No
commons-configuration2-2.8.0.jar 632.5 kB 417 385 18 1.8 Yes No
commons-csv-1.10.0.jar 54.7 kB 32 19 1 1.8 Yes No
commons-lang3-3.12.0.jar 587.4 kB 374 345 17 1.8 Yes No
commons-math3-3.6.1.jar 2.2 MB 1402 1301 75 1.5 Yes No
commons-text-1.10.0.jar 238.4 kB 174 154 8 1.8 Yes No
httpclient-4.5.14.jar 785.6 kB 511 470 24 1.6 Yes No
httpcore-4.4.16.jar 327.9 kB 283 253 17 1.6 Yes No
jena-arq-2.9.4.jar 2.4 MB 1846 1748 81 1.6 Yes No
jena-core-2.7.4.jar 1.7 MB 1389 1300 43 1.6 Yes No
jena-iri-0.9.4.jar 136.4 kB 75 60 2 1.6 Yes No
jena-larq-1.0.0-incubating.jar 44.6 kB 43 25 5 1.6 Yes No
log4j-1.2-api-2.20.0.jar 344.4 kB 241 197 21 1.8 Yes No
log4j-api-2.20.0.jar 313.3 kB 223 189 9 - Yes No
log4j-core-2.20.0.jar 1.8 MB 1305 1210 54 1.8 Yes No
log4j-jcl-2.20.0.jar 12.2 kB 21 4 1 1.8 Yes No
log4j-jul-2.20.0.jar 30 kB 29 14 1 1.8 Yes No
log4j-slf4j-impl-2.20.0.jar 23.9 kB 28 12 2 1.8 Yes No
lucene-analyzers-3.6.2.jar 1.2 MB 396 302 52 1.5 Yes No
lucene-core-3.6.2.jar 1.5 MB 997 973 18 1.5 Yes No
lucene-highlighter-3.6.2.jar 89.2 kB 64 54 2 1.5 Yes No
lucene-memory-3.6.2.jar 29.8 kB 19 10 1 1.5 Yes No
lucene-queries-3.6.2.jar 47.4 kB 36 26 3 1.5 Yes No
lucene-queryparser-3.6.2.jar 318.8 kB 265 233 22 1.5 Yes No
poi-5.2.3.jar 3 MB 1762 1679 64 - Yes No
velocity-engine-core-2.3.jar 531.3 kB 299 256 19 1.8 Yes No
aspectjweaver-1.9.19.jar 2.1 MB 1023 970 36 1.8 Yes No
assertj-core-3.24.2.jar 1.3 MB 854 814 28 - Yes No
checker-qual-3.33.0.jar 224 kB 426 358 30 1.8 Yes No
dom4j-2.1.4.jar 324.7 kB 201 184 14 1.8 Yes No
class-model-2.5.0-b32.jar 88 kB 88 74 3 1.6 Yes No
config-types-2.5.0-b32.jar 10 kB 21 7 1 1.6 Yes No
hk2-2.5.0-b32.jar 3.3 kB 7 0 0 - No No
hk2-api-2.5.0-b32.jar 185.8 kB 191 172 7 1.6 Yes No
hk2-config-2.5.0-b32.jar 206.4 kB 174 157 4 1.6 Yes No
hk2-core-2.5.0-b32.jar 117.5 kB 105 85 7 1.6 Yes No
hk2-locator-2.5.0-b32.jar 187.3 kB 114 98 3 1.6 Yes No
hk2-runlevel-2.5.0-b32.jar 58.1 kB 53 38 3 1.6 Yes No
hk2-utils-2.5.0-b32.jar 134.9 kB 115 90 8 1.6 Yes No
osgi-resource-locator-1.0.1.jar 20.2 kB 23 12 1 1.6 Yes No
spring-bridge-2.5.0-b32.jar 13.2 kB 23 9 2 1.6 Yes No
aopalliance-repackaged-2.5.0-b32.jar 14.8 kB 39 26 4 1.6 Yes No
asm-all-repackaged-2.5.0-b32.jar 832.4 kB 333 183 8 - Yes No
javax.inject-2.5.0-b32.jar 6 kB 15 6 1 1.6 No No
jersey-guava-2.25.1.jar 971.3 kB 775 753 9 1.6 Yes No
jersey-container-servlet-2.25.1.jar 18.1 kB 25 6 3 1.7 Yes No
jersey-container-servlet-core-2.25.1.jar 66.1 kB 66 51 4 1.7 Yes No
jersey-client-2.25.1.jar 169 kB 129 113 5 1.6 Yes No
jersey-common-2.25.1.jar 715.9 kB 516 484 19 1.6 Yes No
jersey-server-2.25.1.jar 940.8 kB 715 666 26 1.7 Yes No
jersey-entity-filtering-2.25.1.jar 69.9 kB 72 57 3 1.7 Yes No
jersey-spring3-2.25.1.jar 23.1 kB 30 13 2 1.7 Yes No
jersey-media-jaxb-2.25.1.jar 72.8 kB 62 47 1 1.6 Yes No
jersey-media-json-jackson-2.25.1.jar 21.7 kB 29 15 2 1.7 Yes No
jersey-test-framework-core-2.25.1.jar 30 kB 34 22 2 1.7 Yes No
jersey-test-framework-provider-inmemory-2.25.1.jar 15.5 kB 23 9 1 1.7 Yes No
hamcrest-core-1.3.jar 45 kB 52 45 3 1.5 Yes No
HdrHistogram-2.1.12.jar 173.8 kB 106 96 2 1.7 Yes No
hibernate-core-4.2.21.Final.jar 4.7 MB 3234 3024 171 1.6 Yes No
hibernate-ehcache-4.2.21.Final.jar 138.4 kB 71 58 6 1.6 Yes No
hibernate-commons-annotations-4.0.2.Final.jar 81.8 kB 82 64 7 1.6 Yes No
hibernate-jpa-2.0-api-1.0.1.Final.jar 102.7 kB 190 176 4 1.5 Yes No
javassist-3.29.2-GA.jar 794.1 kB 450 426 17 1.8 Yes No
jboss-logging-3.1.0.GA.jar 60.8 kB 55 43 1 1.6 Yes No
jboss-transaction-api_1.1_spec-1.0.1.Final.jar 25.2 kB 31 18 2 1.6 Yes No
jfreechart-1.5.4.jar 1.6 MB 784 689 41 1.8 Yes No
json-20230227.jar 72.6 kB 37 28 1 1.6 Yes No
tiger-types-1.4.jar 17.5 kB 22 12 1 1.5 Yes No
LatencyUtils-2.0.3.jar 29.8 kB 31 22 1 1.6 Yes No
mockito-core-4.11.0.jar 684.9 kB 651 579 64 1.8 Yes No
mockito-inline-4.11.0.jar 1.5 kB 6 0 0 - No No
objenesis-3.3.jar 49.4 kB 59 43 10 1.8 Yes No
lombok-1.18.26.jar 2 MB 1047 169 13 - Yes No
REngine-2.1.0.jar 39 kB 43 33 1 1.4 Yes No
jcl-over-slf4j-1.7.36.jar 16.6 kB 23 9 2 1.5 Yes No
slf4j-api-1.7.36.jar 41.1 kB 46 34 4 1.5 Yes No
spring-aop-3.2.18.RELEASE.jar 339.1 kB 282 252 15 1.5 Yes No
spring-aspects-3.2.18.RELEASE.jar 51.4 kB 55 30 7 1.5 Yes No
spring-beans-3.2.18.RELEASE.jar 614.4 kB 401 358 14 1.5 Yes No
spring-context-3.2.18.RELEASE.jar 868.2 kB 737 633 67 1.5 Yes No
spring-context-support-3.2.18.RELEASE.jar 128.8 kB 97 76 10 1.5 Yes No
spring-core-3.2.18.RELEASE.jar 885.6 kB 686 648 32 1.5 Yes No
spring-expression-3.2.18.RELEASE.jar 196.3 kB 140 128 6 1.5 Yes No
spring-jdbc-3.2.18.RELEASE.jar 406.1 kB 328 296 18 1.5 Yes No
spring-orm-3.2.18.RELEASE.jar 385 kB 296 276 14 1.5 Yes No
spring-test-3.2.18.RELEASE.jar 458.3 kB 369 335 27 1.5 Yes No
spring-tx-3.2.18.RELEASE.jar 242.6 kB 233 197 20 1.5 Yes No
spring-web-3.2.18.RELEASE.jar 631.4 kB 490 442 35 1.5 Yes No
spring-webmvc-3.2.18.RELEASE.jar 645.1 kB 401 353 28 1.5 Yes No
spring-retry-1.0.3.RELEASE.jar 80.9 kB 100 81 10 1.5 Yes No
spring-security-acl-3.2.10.RELEASE.jar 82.8 kB 78 62 5 1.5 Yes No
spring-security-config-3.2.10.RELEASE.jar 404.8 kB 199 156 22 1.5 Yes No
spring-security-core-3.2.10.RELEASE.jar 369.6 kB 370 306 43 1.5 Yes No
spring-security-web-3.2.10.RELEASE.jar 347 kB 300 257 34 1.5 Yes No
snakeyaml-2.0.jar 334.8 kB 280 232 24 - Yes No
gemma-gsec-0.0.12.jar 103.4 kB 78 54 8 1.8 Yes No
pull-parser-2.1.10.jar 52.6 kB 46 31 8 1.1 Yes No
compass-fork-1.2.0.jar 2 MB 1737 1531 176 1.8 Yes No
xercesImpl-2.12.2.jar 1.4 MB 1045 962 40 1.7 No No
xml-apis-1.4.01.jar 220.5 kB 391 346 29 1.1 No No
xpp3-1.1.4c.jar 120.1 kB 78 56 13 1.1 Yes No
Total Size Entries Classes Packages Java Version Debug Information Sealed
202 100.4 MB 57899 51206 2820 1.8 175 1
compile: 172 compile: 86.7 MB compile: 49005 compile: 42966 compile: 2428 - compile: 147 compile: 1
test: 14 test: 9.8 MB test: 6332 test: 6001 test: 268 - test: 12 -
runtime: 15 runtime: 3.7 MB runtime: 2459 runtime: 2160 runtime: 120 - runtime: 15 -
provided: 1 provided: 95.8 kB provided: 103 provided: 79 provided: 4 - provided: 1 -