Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses
baseCode baseCode 1.1.5 jar The Apache Software License, Version 2.0
colt colt 1.2.0 jar -
com.fasterxml.jackson.core jackson-annotations 2.14.1 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-core 2.14.1 jar The Apache Software License, Version 2.0
com.fasterxml.jackson.core jackson-databind 2.14.1 jar The Apache Software License, Version 2.0
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0
com.google.guava guava 31.1-jre jar Apache License, Version 2.0
commons-beanutils commons-beanutils 1.9.4 jar Apache License, Version 2.0
commons-cli commons-cli 1.5.0 jar Apache License, Version 2.0
commons-io commons-io 2.11.0 jar Apache License, Version 2.0
commons-logging commons-logging 1.2 jar The Apache Software License, Version 2.0
commons-logging commons-logging-api 1.1 jar -
gemma gemma-core 1.29.4 jar The Apache Software License, Version 2.0
javax.resource javax.resource-api 1.7.1 jar CDDL + GPLv2 with classpath exception
net.sf.ehcache ehcache-core 2.4.3 jar The Apache Software License, Version 2.0
org.apache.ant ant 1.10.12 jar The Apache Software License, Version 2.0
org.apache.commons commons-collections4 4.4 jar Apache License, Version 2.0
org.apache.commons commons-configuration2 2.8.0 jar Apache License, Version 2.0
org.apache.commons commons-dbcp2 2.9.0 jar Apache License, Version 2.0
org.apache.commons commons-lang3 3.12.0 jar Apache License, Version 2.0
org.apache.commons commons-text 1.10.0 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-1.2-api 2.17.2 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-api 2.17.2 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-core 2.17.2 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-jcl 2.17.2 jar Apache License, Version 2.0
org.apache.logging.log4j log4j-jul 2.17.2 jar Apache License, Version 2.0
org.apache.xbean xbean-spring 4.22 jar The Apache Software License, Version 2.0
org.hibernate hibernate-core 4.2.21.Final jar GNU Lesser General Public License
org.hibernate hibernate-ehcache 4.2.21.Final jar GNU Lesser General Public License
org.jfree jfreechart 1.5.3 jar GNU Lesser General Public Licence
org.projectlombok lombok 1.18.24 jar The MIT License
org.slf4j slf4j-api 1.7.36 jar MIT License
org.springframework spring-beans 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-context-support 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-core 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-jdbc 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-orm 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-tx 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-acl 3.2.10.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-core 3.2.10.RELEASE jar The Apache Software License, Version 2.0
pavlab gemma-gsec 0.0.10 jar The Apache Software License, Version 2.0
xalan xalan 2.7.2 jar The Apache Software License, Version 2.0
xerces xercesImpl 2.10.0 jar The Apache Software License, Version 2.0
xml-apis xml-apis 1.4.01 jar The Apache Software License, Version 2.0The SAX LicenseThe W3C License

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
commons-collections commons-collections 3.2.2 jar Apache License, Version 2.0
mysql mysql-connector-java 8.0.30 jar The GNU General Public License, v2 with FOSS exception
org.apache.logging.log4j log4j-slf4j-impl 2.17.2 jar Apache License, Version 2.0
org.dom4j dom4j 2.1.3 jar BSD 3-clause New License
org.springframework spring-aop 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-aspects 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-expression 3.2.18.RELEASE jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Classifier Type Licenses
gemma gemma-core 1.29.4 tests test-jar The Apache Software License, Version 2.0
io.takari.junit takari-cpsuite 1.2.7 - jar The Eclipse Public License, Version 1.0
junit junit 4.13.2 - jar Eclipse Public License 1.0
org.assertj assertj-core 3.23.1 - jar Apache License, Version 2.0
org.mockito mockito-core 4.8.1 - jar The MIT License
org.mockito mockito-inline 4.8.1 - jar The MIT License
org.springframework spring-test 3.2.18.RELEASE - jar The Apache Software License, Version 2.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Classifier Type Licenses
RoSuDA JRIEngine 0.5-0 - jar -
antlr antlr 2.7.7 - jar BSD License
aopalliance aopalliance 1.0 - jar Public Domain
asm asm 3.3.1 - jar BSD
asm asm-commons 3.3.1 - jar BSD
asm asm-tree 3.3.1 - jar BSD
com.github.fommil jniloader 1.1 - jar LGPL
com.github.fommil.netlib all 1.1.2 - pom BSD 3 Clause
com.github.fommil.netlib core 1.1.2 - jar BSD 3 Clause
com.github.fommil.netlib native_ref-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib native_system-java 1.1 - jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_ref-win-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-armhf 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-i686 1.1 natives jar BSD 3 Clause
com.github.fommil.netlib netlib-native_system-win-x86_64 1.1 natives jar BSD 3 Clause
com.google.errorprone error_prone_annotations 2.11.0 - jar Apache 2.0
com.google.guava failureaccess 1.0.1 - jar The Apache Software License, Version 2.0
com.google.guava listenablefuture 9999.0-empty-to-avoid-conflict-with-guava - jar The Apache Software License, Version 2.0
com.google.j2objc j2objc-annotations 1.3 - jar The Apache Software License, Version 2.0
com.googlecode.javaewah JavaEWAH 0.7.9 - jar Apache 2
com.googlecode.matrix-toolkits-java mtj 1.0.4 - jar GNU Lesser General Public License
com.ibm.icu icu4j 3.4.4 - jar ICU License
com.opencsv opencsv 5.7.1 - jar Apache 2
com.zaxxer SparseBitSet 1.2 - jar The Apache Software License, Version 2.0
commons-codec commons-codec 1.5 - jar The Apache Software License, Version 2.0
commons-el commons-el 1.0 - jar The Apache Software License, Version 2.0
commons-lang commons-lang 2.4 - jar The Apache Software License, Version 2.0
commons-net commons-net 3.9.0 - jar Apache License, Version 2.0
concurrent concurrent 1.3.4 - jar Public domain, Sun Microsoystems
jakarta-regexp jakarta-regexp 1.4 - jar -
javax.activation javax.activation-api 1.2.0 - jar CDDL/GPLv2+CE
javax.transaction javax.transaction-api 1.3 - jar CDDL + GPLv2 with classpath exception
javax.transaction jta 1.1 - jar -
javax.xml.bind jaxb-api 2.3.1 - jar CDDL 1.1GPL2 w/ CPE
jaxen jaxen 1.2.0 - jar BSD License 2.0
jboss jboss-ejb3x 4.2.2.GA - jar -
mx4j mx4j 3.0.2 - jar The Apache Software License, Version 2.0
net.java.dev.javacc javacc 5.0 - jar Berkeley Software Distribution (BSD) License
net.sourceforge.f2j arpack_combined_all 0.1 - jar The BSD License
obo org.geneontology 1.002 - jar -
org.apache.ant ant-launcher 1.10.12 - jar The Apache Software License, Version 2.0
org.apache.commons commons-csv 1.9.0 - jar Apache License, Version 2.0
org.apache.commons commons-math3 3.6.1 - jar Apache License, Version 2.0
org.apache.commons commons-pool2 2.10.0 - jar Apache License, Version 2.0
org.apache.httpcomponents httpclient 4.5.13 - jar Apache License, Version 2.0
org.apache.httpcomponents httpcore 4.4.15 - jar Apache License, Version 2.0
org.apache.jena jena-arq 2.9.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-core 2.7.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-iri 0.9.4 - jar The Apache Software License, Version 2.0
org.apache.jena jena-larq 1.0.0-incubating - jar The Apache Software License, Version 2.0
org.apache.lucene lucene-analyzers 3.6.2 - jar Apache 2
org.apache.lucene lucene-core 3.6.2 - jar Apache 2
org.apache.lucene lucene-highlighter 3.6.2 - jar Apache 2
org.apache.lucene lucene-memory 3.6.2 - jar Apache 2
org.apache.lucene lucene-queries 3.6.2 - jar Apache 2
org.apache.lucene lucene-queryparser 3.6.2 - jar Apache 2
org.apache.poi poi 5.2.2 - jar Apache License, Version 2.0
org.apache.velocity velocity 1.7 - jar The Apache Software License, Version 2.0
org.aspectj aspectjweaver 1.9.9.1 - jar Eclipse Public License - v 2.0
org.checkerframework checker-qual 3.12.0 - jar The MIT License
org.hibernate.common hibernate-commons-annotations 4.0.2.Final - jar GNU LESSER GENERAL PUBLIC LICENSE
org.hibernate.javax.persistence hibernate-jpa-2.0-api 1.0.1.Final - jar null
org.jboss.logging jboss-logging 3.1.0.GA - jar GNU Lesser General Public License, version 2.1
org.jboss.spec.javax.transaction jboss-transaction-api_1.1_spec 1.0.1.Final - jar Common Development and Distribution LicenseGNU General Public License, Version 2 with the Classpath Exception
org.json json 20220924 - jar Public Domain
org.rosuda.REngine REngine 2.1.0 - jar LGPL v2.1
org.slf4j jcl-over-slf4j 1.7.36 - jar Apache License, Version 2.0
org.springframework spring-web 3.2.18.RELEASE - jar The Apache Software License, Version 2.0
org.springframework.retry spring-retry 1.0.3.RELEASE - jar Apache 2.0
org.springframework.security spring-security-web 3.2.10.RELEASE - jar The Apache Software License, Version 2.0
pull-parser pull-parser 2.1.10 - jar Indiana University Extreme! Lab Software License
ubc.chibi.compass-fork compass-fork 1.2.0 - jar Apache 2
xalan serializer 2.7.2 - jar The Apache Software License, Version 2.0
xpp3 xpp3 1.1.4c - jar Indiana University Extreme! Lab Software License, vesion 1.1.1Public DomainApache Software License, version 1.1

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
RoSuDA JRI 0.5-0 jar -
com.google.protobuf protobuf-java 3.19.4 jar 3-Clause BSD License
com.sun.mail javax.mail 1.6.2 jar CDDL/GPLv2+CE
javax.activation activation 1.1 jar Common Development and Distribution License (CDDL) v1.0
org.javassist javassist 3.29.2-GA jar MPL 1.1LGPL 2.1Apache License 2.0
org.springframework.security spring-security-config 3.2.10.RELEASE jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
net.bytebuddy byte-buddy 1.12.16 jar Apache License, Version 2.0
net.bytebuddy byte-buddy-agent 1.12.16 jar Apache License, Version 2.0
org.hamcrest hamcrest-core 1.3 jar New BSD License
org.objenesis objenesis 3.2 jar Apache License, Version 2.0

system

The following is a list of system dependencies for this project. These dependencies are required to compile the application:

GroupId ArtifactId Version Type Licenses
com.sun tools 1.8.0 jar -

Project Dependency Graph

Dependency Tree

Licenses

Unnamed: JPA 2.0 API

The GNU General Public License, v2 with FOSS exception: MySQL Connector/J

3-Clause BSD License: Protocol Buffers [Core]

GNU LESSER GENERAL PUBLIC LICENSE: Hibernate Commons Annotations

Apache 2.0: Spring Retry, error-prone annotations

The BSD License: Fortran to Java ARPACK

Eclipse Public License 1.0: JUnit

The Eclipse Public License, Version 1.0: takari-cpsuite

MIT License: SLF4J API Module

ICU License: ICU4J

GPL2 w/ CPE: jaxb-api

New BSD License: Hamcrest Core

CDDL/GPLv2+CE: JavaBeans Activation Framework API jar, JavaMail API

Apache 2: Compass, JavaEWAH, Lucene Common Analyzers, Lucene Core, Lucene Highlighter, Lucene Memory, Lucene Queries, Lucene Query Parser, opencsv

BSD: ASM Commons, ASM Core, ASM Tree

Public domain, Sun Microsoystems: Dough Lea's util.concurrent package

BSD 3 Clause: all, core, native_ref-java, native_system-java, netlib-native_ref-linux-armhf, netlib-native_ref-linux-i686, netlib-native_ref-linux-x86_64, netlib-native_ref-osx-x86_64, netlib-native_ref-win-i686, netlib-native_ref-win-x86_64, netlib-native_system-linux-armhf, netlib-native_system-linux-i686, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, netlib-native_system-win-i686, netlib-native_system-win-x86_64

Unknown: JRI, JRIEngine, Java Transaction API, colt, jakarta-regexp, jboss-ejb3x

LGPL: JniLoader

BSD License: AntLR Parser Generator

Apache License 2.0: Javassist

The MIT License: Checker Qual, Project Lombok, mockito-core, mockito-inline

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Apache License, Version 2.0: Apache Commons BeanUtils, Apache Commons CLI, Apache Commons CSV, Apache Commons Collections, Apache Commons Configuration, Apache Commons DBCP, Apache Commons IO, Apache Commons Lang, Apache Commons Math, Apache Commons Net, Apache Commons Pool, Apache Commons Text, Apache HttpClient, Apache HttpCore, Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Commons Logging Bridge, Apache Log4j Core, Apache Log4j JUL Adapter, Apache Log4j SLF4J Binding, Apache POI - Common, AssertJ fluent assertions, Byte Buddy (without dependencies), Byte Buddy agent, Guava: Google Core Libraries for Java, JCL 1.2 implemented over SLF4J, Objenesis

GNU General Public License, Version 2 with the Classpath Exception: Java Transaction API

MPL 1.1: Javassist

CDDL 1.1: jaxb-api

The SAX License: XML Commons External Components XML APIs

Common Development and Distribution License: Java Transaction API

LGPL v2.1: REngine Java interface to R

BSD 3-clause New License: dom4j

The W3C License: XML Commons External Components XML APIs

Indiana University Extreme! Lab Software License, vesion 1.1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Public Domain: AOP alliance, JSON in Java, MXP1: Xml Pull Parser 3rd Edition (XPP3)

Indiana University Extreme! Lab Software License: XPP - XML Pull Parser

GNU Lesser General Public License: A Hibernate O/RM Module, Matrix Toolkits for Java

GNU Lesser General Public License, version 2.1: JBoss Logging 3

Berkeley Software Distribution (BSD) License: JavaCC

LGPL 2.1: Javassist

CDDL + GPLv2 with classpath exception: javax.resource API, javax.transaction API

Eclipse Public License - v 2.0: AspectJ Weaver

GNU Lesser General Public Licence: JFreeChart

The Apache Software License, Version 2.0: Apache Ant Core, Apache Ant Launcher, Apache Commons Logging, Apache Velocity, Apache XBean :: Spring, Commons Codec, Commons Lang, EL, Ehcache Core, FindBugs-jsr305, Gemma CLI, Gemma Core, Guava InternalFutureFailureAccess and InternalFutures, Guava ListenableFuture only, J2ObjC Annotations, Jackson-annotations, Jackson-core, LARQ, MX4J, SparseBitSet, Spring AOP, Spring Aspects, Spring Beans, Spring Context, Spring Context Support, Spring Core, Spring Expression Language (SpEL), Spring JDBC, Spring Object/Relational Mapping, Spring TestContext Framework, Spring Transaction, Spring Web, XML Commons External Components XML APIs, Xalan Java, Xalan Java Serializer, Xerces2-j, baseCode, gsec, jackson-databind, jena-arq, jena-core, jena-iri, spring-security-acl, spring-security-config, spring-security-core, spring-security-web

Apache Software License, version 1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

BSD License 2.0: jaxen

Dependency File Details

Filename Size Entries Classes Packages Java Version Debug Information Sealed
JRI-0.5-0.jar 71.8 kB 15 9 1 1.4 Yes No
JRIEngine-0.5-0.jar 9.7 kB 5 2 1 1.4 Yes No
antlr-2.7.7.jar 445.3 kB 239 224 12 1.2 Yes No
aopalliance-1.0.jar 4.5 kB 15 9 2 1.3 Yes No
asm-3.3.1.jar 43.6 kB 24 23 2 1.2 No No
asm-commons-3.3.1.jar 38.3 kB 25 24 1 1.2 No No
asm-tree-3.3.1.jar 21.5 kB 28 27 1 1.2 No No
baseCode-1.1.5.jar 470.8 kB 269 234 25 1.8 Yes No
colt-1.2.0.jar 581.9 kB 623 593 24 1.2 No No
jackson-annotations-2.14.1.jar 76.1 kB 85 73 2 - Yes No
jackson-core-2.14.1.jar 459.3 kB 191 161 15 - Yes No
jackson-databind-2.14.1.jar 1.6 MB 808 769 24 - Yes No
jniloader-1.1.jar 8.7 kB 13 2 1 1.6 Yes No
all-1.1.2.pom 4.3 kB - - - - - -
core-1.1.2.jar 164.4 kB 17 6 1 1.6 Yes No
native_ref-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
native_system-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
netlib-native_ref-linux-armhf-1.1-natives.jar 1.2 MB 8 0 0 - No No
netlib-native_ref-linux-i686-1.1-natives.jar 1.5 MB 8 0 0 - No No
netlib-native_ref-linux-x86_64-1.1-natives.jar 1.7 MB 8 0 0 - No No
netlib-native_ref-osx-x86_64-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-i686-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-x86_64-1.1-natives.jar 2.3 MB 11 0 0 - No No
netlib-native_system-linux-armhf-1.1-natives.jar 310.9 kB 11 0 0 - No No
netlib-native_system-linux-i686-1.1-natives.jar 435.4 kB 11 0 0 - No No
netlib-native_system-linux-x86_64-1.1-natives.jar 458.6 kB 11 0 0 - No No
netlib-native_system-osx-x86_64-1.1-natives.jar 554 kB 11 0 0 - No No
netlib-native_system-win-i686-1.1-natives.jar 561.5 kB 11 0 0 - No No
netlib-native_system-win-x86_64-1.1-natives.jar 637.4 kB 11 0 0 - No No
jsr305-3.0.2.jar 19.9 kB 46 35 3 1.5 Yes No
error_prone_annotations-2.11.0.jar 16 kB 38 26 2 1.7 Yes No
failureaccess-1.0.1.jar 4.6 kB 15 2 1 1.7 Yes No
guava-31.1-jre.jar 3 MB 2053 2023 18 1.8 Yes No
listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar 2.2 kB 7 0 0 - No No
j2objc-annotations-1.3.jar 8.8 kB 23 12 1 1.5 Yes No
protobuf-java-3.19.4.jar 1.7 MB 701 675 2 1.7 Yes No
JavaEWAH-0.7.9.jar 125.1 kB 81 69 3 1.6 Yes No
mtj-1.0.4.jar 269 kB 196 183 3 1.6 Yes No
icu4j-3.4.4.jar 3.2 MB 1073 525 6 1.3 Yes No
opencsv-5.7.1.jar 238.8 kB 195 156 15 1.8 Yes No
javax.mail-1.6.2.jar 659 kB 375 340 14 1.7 Yes No
SparseBitSet-1.2.jar 24.5 kB 25 15 1 1.5 Yes No
commons-beanutils-1.9.4.jar 246.9 kB 154 137 5 1.6 Yes No
commons-cli-1.5.0.jar 58.3 kB 42 29 1 1.7 Yes No
commons-codec-1.5.jar 73.1 kB 60 43 5 1.4 Yes No
commons-collections-3.2.2.jar 588.3 kB 484 460 12 1.3 Yes No
commons-el-1.0.jar 112.3 kB 79 68 2 1.2 Yes No
commons-io-2.11.0.jar 327.1 kB 224 201 11 1.8 Yes No
commons-lang-2.4.jar 261.8 kB 148 127 9 1.2 Yes No
commons-logging-1.2.jar 61.8 kB 42 28 2 1.2 Yes No
commons-logging-api-1.1.jar 44.6 kB 29 20 2 1.1 Yes No
commons-net-3.9.0.jar 316.4 kB 229 197 20 1.8 Yes No
concurrent-1.3.4.jar 189.3 kB 230 221 2 1.1 No No
gemma-core/target/classes - 0 0 0 - No No
test-classes 0 kB - - - - - -
takari-cpsuite-1.2.7.jar 22.5 kB 32 20 1 1.7 Yes No
jakarta-regexp-1.4.jar 28.6 kB 22 17 1 1.1 No No
activation-1.1.jar 63 kB 50 38 3 1.4 Yes No
javax.activation-api-1.2.0.jar 56.7 kB 41 31 1 1.5 Yes No
javax.resource-api-1.7.1.jar 69.9 kB 111 89 6 1.7 Yes No
javax.transaction-api-1.3.jar 28 kB 30 19 1 1.7 Yes No
jta-1.1.jar 15.1 kB 24 18 2 1.3 Yes No
jaxb-api-2.3.1.jar 128.1 kB 136 111 7 - Yes No
jaxen-1.2.0.jar 232.5 kB 238 213 16 1.4 Yes No
jboss-ejb3x-4.2.2.GA.jar 20.4 kB 48 41 4 1.5 Yes No
junit-4.13.2.jar 384.6 kB 389 350 32 1.5 Yes No
mx4j-3.0.2.jar 409.5 kB 301 282 16 1.3 Yes No
mysql-connector-java-8.0.30.jar 2.5 MB 1117 1064 29 1.8 Yes No
byte-buddy-1.12.16.jar 3.9 MB 2726 2672 39 - Yes No
byte-buddy-agent-1.12.16.jar 256.3 kB 90 70 3 - Yes No
javacc-5.0.jar 298.6 kB 176 154 6 1.4 No No
ehcache-core-2.4.3.jar 1 MB 801 732 57 1.5 Yes No
arpack_combined_all-0.1.jar 1.2 MB 926 915 6 1.4 Yes No
org.geneontology-1.002.jar 307.3 kB 276 256 14 1.4 Yes Yes
ant-1.10.12.jar 2.3 MB 1246 1162 62 1.8 Yes No
ant-launcher-1.10.12.jar 18.7 kB 14 4 1 1.8 Yes No
commons-collections4-4.4.jar 751.9 kB 555 524 19 1.8 Yes No
commons-configuration2-2.8.0.jar 632.5 kB 417 385 18 1.8 Yes No
commons-csv-1.9.0.jar 51.3 kB 30 17 1 1.8 Yes No
commons-dbcp2-2.9.0.jar 211.3 kB 97 80 4 1.8 Yes No
commons-lang3-3.12.0.jar 587.4 kB 374 345 17 1.8 Yes No
commons-math3-3.6.1.jar 2.2 MB 1402 1301 75 1.5 Yes No
commons-pool2-2.10.0.jar 141.2 kB 95 80 3 1.8 Yes No
commons-text-1.10.0.jar 238.4 kB 174 154 8 1.8 Yes No
httpclient-4.5.13.jar 780.3 kB 511 470 24 1.6 Yes No
httpcore-4.4.15.jar 328.3 kB 283 253 17 1.6 Yes No
jena-arq-2.9.4.jar 2.4 MB 1846 1748 81 1.6 Yes No
jena-core-2.7.4.jar 1.7 MB 1389 1300 43 1.6 Yes No
jena-iri-0.9.4.jar 136.4 kB 75 60 2 1.6 Yes No
jena-larq-1.0.0-incubating.jar 44.6 kB 43 25 5 1.6 Yes No
log4j-1.2-api-2.17.2.jar 303.4 kB 218 176 19 1.8 Yes No
log4j-api-2.17.2.jar 302.5 kB 211 177 9 - Yes No
log4j-core-2.17.2.jar 1.8 MB 1230 1137 52 1.8 Yes No
log4j-jcl-2.17.2.jar 12.8 kB 20 3 1 1.8 Yes No
log4j-jul-2.17.2.jar 30.9 kB 29 14 1 1.8 Yes No
log4j-slf4j-impl-2.17.2.jar 24.2 kB 26 10 2 1.8 Yes No
lucene-analyzers-3.6.2.jar 1.2 MB 396 302 52 1.5 Yes No
lucene-core-3.6.2.jar 1.5 MB 997 973 18 1.5 Yes No
lucene-highlighter-3.6.2.jar 89.2 kB 64 54 2 1.5 Yes No
lucene-memory-3.6.2.jar 29.8 kB 19 10 1 1.5 Yes No
lucene-queries-3.6.2.jar 47.4 kB 36 26 3 1.5 Yes No
lucene-queryparser-3.6.2.jar 318.8 kB 265 233 22 1.5 Yes No
poi-5.2.2.jar 2.9 MB 1735 1652 64 - Yes No
velocity-1.7.jar 449.5 kB 306 270 25 1.4 Yes No
xbean-spring-4.22.jar 136.8 kB 85 63 7 1.8 Yes No
aspectjweaver-1.9.9.1.jar 2.1 MB 1022 970 36 1.8 Yes No
assertj-core-3.23.1.jar 1.2 MB 819 780 26 - Yes No
checker-qual-3.12.0.jar 208.8 kB 399 333 29 1.8 Yes No
dom4j-2.1.3.jar 323.6 kB 201 184 14 1.8 Yes No
hamcrest-core-1.3.jar 45 kB 52 45 3 1.5 Yes No
hibernate-core-4.2.21.Final.jar 4.7 MB 3234 3024 171 1.6 Yes No
hibernate-ehcache-4.2.21.Final.jar 138.4 kB 71 58 6 1.6 Yes No
hibernate-commons-annotations-4.0.2.Final.jar 81.8 kB 82 64 7 1.6 Yes No
hibernate-jpa-2.0-api-1.0.1.Final.jar 102.7 kB 190 176 4 1.5 Yes No
javassist-3.29.2-GA.jar 794.1 kB 450 426 17 1.8 Yes No
jboss-logging-3.1.0.GA.jar 60.8 kB 55 43 1 1.6 Yes No
jboss-transaction-api_1.1_spec-1.0.1.Final.jar 25.2 kB 31 18 2 1.6 Yes No
jfreechart-1.5.3.jar 1.6 MB 767 671 42 1.8 Yes No
json-20220924.jar 70.3 kB 36 27 1 1.6 Yes No
mockito-core-4.8.1.jar 684 kB 652 580 64 1.8 Yes No
mockito-inline-4.8.1.jar 1.5 kB 6 0 0 - No No
objenesis-3.2.jar 49.4 kB 59 43 10 1.8 Yes No
lombok-1.18.24.jar 2 MB 1045 168 13 - Yes No
REngine-2.1.0.jar 39 kB 43 33 1 1.4 Yes No
jcl-over-slf4j-1.7.36.jar 16.6 kB 23 9 2 1.5 Yes No
slf4j-api-1.7.36.jar 41.1 kB 46 34 4 1.5 Yes No
spring-aop-3.2.18.RELEASE.jar 339.1 kB 282 252 15 1.5 Yes No
spring-aspects-3.2.18.RELEASE.jar 51.4 kB 55 30 7 1.5 Yes No
spring-beans-3.2.18.RELEASE.jar 614.4 kB 401 358 14 1.5 Yes No
spring-context-3.2.18.RELEASE.jar 868.2 kB 737 633 67 1.5 Yes No
spring-context-support-3.2.18.RELEASE.jar 128.8 kB 97 76 10 1.5 Yes No
spring-core-3.2.18.RELEASE.jar 885.6 kB 686 648 32 1.5 Yes No
spring-expression-3.2.18.RELEASE.jar 196.3 kB 140 128 6 1.5 Yes No
spring-jdbc-3.2.18.RELEASE.jar 406.1 kB 328 296 18 1.5 Yes No
spring-orm-3.2.18.RELEASE.jar 385 kB 296 276 14 1.5 Yes No
spring-test-3.2.18.RELEASE.jar 458.3 kB 369 335 27 1.5 Yes No
spring-tx-3.2.18.RELEASE.jar 242.6 kB 233 197 20 1.5 Yes No
spring-web-3.2.18.RELEASE.jar 631.4 kB 490 442 35 1.5 Yes No
spring-retry-1.0.3.RELEASE.jar 80.9 kB 100 81 10 1.5 Yes No
spring-security-acl-3.2.10.RELEASE.jar 82.8 kB 78 62 5 1.5 Yes No
spring-security-config-3.2.10.RELEASE.jar 404.8 kB 199 156 22 1.5 Yes No
spring-security-core-3.2.10.RELEASE.jar 369.6 kB 370 306 43 1.5 Yes No
spring-security-web-3.2.10.RELEASE.jar 347 kB 300 257 34 1.5 Yes No
gemma-gsec-0.0.10.jar 126.4 kB 88 63 8 1.8 Yes No
pull-parser-2.1.10.jar 52.6 kB 46 31 8 1.1 Yes No
compass-fork-1.2.0.jar 2 MB 1737 1531 176 1.8 Yes No
serializer-2.7.2.jar 276.4 kB 123 108 3 1.3 Yes No
xalan-2.7.2.jar 3.2 MB 1565 1501 49 1.3 Yes No
xercesImpl-2.10.0.jar 1.4 MB 1031 948 40 1.3 No No
xml-apis-1.4.01.jar 220.5 kB 391 346 29 1.1 No No
xpp3-1.1.4c.jar 120.1 kB 78 56 13 1.1 Yes No
Total Size Entries Classes Packages Java Version Debug Information Sealed
151 89.8 MB 50282 44657 2314 1.8 125 1
compile: 127 compile: 75 MB compile: 40993 compile: 35990 compile: 1965 - compile: 103 compile: 1
test: 11 test: 7.1 MB test: 5194 test: 4895 test: 205 - test: 9 -
runtime: 13 runtime: 7.7 MB runtime: 4095 runtime: 3772 runtime: 144 - runtime: 13 -