Package ubic.gemma.core.apps
Class DeleteDiffExCli
-
- All Implemented Interfaces:
CLI
public class DeleteDiffExCli extends ExpressionExperimentManipulatingCLI
Delete differential expression analsyes on a per-experiment basis.- Author:
- paul
-
-
Field Summary
-
Fields inherited from class ubic.gemma.core.util.AbstractSpringAwareCLI
auditEventService, auditTrailService
-
Fields inherited from class ubic.gemma.core.util.AbstractCLI
AUTO_OPTION_NAME, autoSeek, autoSeekEventType, FAILURE, FAILURE_FROM_ERROR_OBJECTS, FOOTER, HEADER, host, log, mDate, numThreads, port, SUCCESS, THREADS_OPTION
-
-
Constructor Summary
Constructors Constructor Description DeleteDiffExCli()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected voiddoWork()Command line implementation.StringgetCommandName()A short memorable name for the command that can be used to locate this class.StringgetShortDesc()Obtain a short description for this command explaining what it does.-
Methods inherited from class ubic.gemma.core.apps.ExpressionExperimentManipulatingCLI
buildOptions, findGeneByOfficialSymbol, getCommandGroup, getEeService, getExpressionExperiments, getGeneService, getTaxon, getTaxonService, processOptions, setTaxon, suppressAllOption
-
Methods inherited from class ubic.gemma.core.util.AbstractCLIContextCLI
locateArrayDesign, readListFileToStrings, setTaxonByName
-
Methods inherited from class ubic.gemma.core.util.AbstractSpringAwareCLI
executeBatchTasks, getBean, getBean, getPersisterHelper, noNeedToRun, processStandardOptions, requireLogin
-
Methods inherited from class ubic.gemma.core.util.AbstractCLI
addAutoOption, addDateOption, addErrorObject, addErrorObject, addHostAndPortOptions, addSuccessObject, addThreadsOption, buildStandardOptions, executeCommand, getDoubleOptionValue, getDoubleOptionValue, getFileNameOptionValue, getFileNameOptionValue, getIntegerOptionValue, getIntegerOptionValue, getLimitingDate, printHelp, resetLogging
-
-
-
-
Method Detail
-
getCommandName
public String getCommandName()
Description copied from interface:CLIA short memorable name for the command that can be used to locate this class.- Returns:
- name; if null, this will not be available as a shortcut command.
-
doWork
protected void doWork() throws ExceptionDescription copied from class:AbstractCLICommand line implementation. This is called afterAbstractCLI.buildOptions(Options)andAbstractCLI.processOptions(CommandLine), so the implementation can assume that all its arguments have already been initialized.- Specified by:
doWorkin classAbstractCLI- Throws:
Exception- in case of unrecoverable failure, an exception is thrown and will result in aAbstractCLI.FAILUREexit code, otherwise useAbstractCLI.addErrorObject(java.lang.Object, java.lang.String, java.lang.Throwable)
-
getShortDesc
public String getShortDesc()
Description copied from interface:CLIObtain a short description for this command explaining what it does.- Specified by:
getShortDescin interfaceCLI- Overrides:
getShortDescin classAbstractSpringAwareCLI
-
-