Package ubic.gemma.core.analysis.preprocess

Class ProcessedExpressionDataVectorCreateHelperServiceImpl

java.lang.Object

ubic.gemma.core.analysis.preprocess.ProcessedExpressionDataVectorCreateHelperServiceImpl

All Implemented Interfaces:

ProcessedExpressionDataVectorCreateHelperService

@Service
public class ProcessedExpressionDataVectorCreateHelperServiceImpl
extends Object
implements ProcessedExpressionDataVectorCreateHelperService

Transactional methods.

Author:

Paul

See Also:

ProcessedExpressionDataVectorService

Constructor Summary

Constructors

Constructor	Description
ProcessedExpressionDataVectorCreateHelperServiceImpl()

Method Summary

Modifier and Type	Method	Description
ExpressionExperiment	createProcessedDataVectors(ExpressionExperiment ee, Collection<ProcessedExpressionDataVector> vecs)
ExpressionExperiment	createProcessedExpressionData(ExpressionExperiment ee)
void	reorderByDesign(Long eeId)
ExpressionExperiment	updateRanks(ExpressionExperiment ee)	If possible, update the ranks for the processed data vectors.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProcessedExpressionDataVectorCreateHelperServiceImpl

public ProcessedExpressionDataVectorCreateHelperServiceImpl()

Method Detail

createProcessedDataVectors

@Transactional
public ExpressionExperiment createProcessedDataVectors(ExpressionExperiment ee,
                                                       Collection<ProcessedExpressionDataVector> vecs)

Specified by:

createProcessedDataVectors in interface ProcessedExpressionDataVectorCreateHelperService

createProcessedExpressionData

@Transactional
public ExpressionExperiment createProcessedExpressionData(ExpressionExperiment ee)

Specified by:

createProcessedExpressionData in interface ProcessedExpressionDataVectorCreateHelperService

reorderByDesign

@Transactional
public void reorderByDesign(Long eeId)

Specified by:

reorderByDesign in interface ProcessedExpressionDataVectorCreateHelperService

updateRanks

public ExpressionExperiment updateRanks(ExpressionExperiment ee)

Description copied from interface: ProcessedExpressionDataVectorCreateHelperService

If possible, update the ranks for the processed data vectors. For data sets with only ratio expression values provided, ranks will not be computable.

Specified by:

updateRanks in interface ProcessedExpressionDataVectorCreateHelperService

Parameters:

ee - the experiment

Returns:

expression ranks based on computed intensities