Package ubic.basecode.util.r

Class JRIClientTest

java.lang.Object

ubic.basecode.util.r.AbstractRClientTest

ubic.basecode.util.r.JRIClientTest

public class JRIClientTest
extends AbstractRClientTest

For this test to work, you need to have R installed, the R_HOME environment variable set and rJava installed with the JRI library.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.basecode.util.r.AbstractRClientTest

log

Constructor Summary

Constructors

Constructor	Description
JRIClientTest()

Method Summary

Modifier and Type	Method	Description
static void	checkRHome()
protected AbstractRClient	createRClient()

Methods inherited from class ubic.basecode.util.r.AbstractRClientTest

setUp, tearDown, testAnovaA, testAnovaB, testAnovaC, testAnovaD, testAnovaE, testAnovaF, testAssignAndRetrieveMatrix, testAssignAndRetrieveMatrixB, testAssignAndRetrieveMatrixC, testAssignAndRetrieveMatrixD, testAssignStringList, testDataFrameA, testDoubleArrayTwoDoubleArrayEval, testDoubleTwoDoubleArrayEval, testExec, testExecDoubleArray, testExecError, testFactorAssign, testFindExecutable, testLimmaA, testLinearModelA, testLinearModelB, testLinearModelC, testLinearModelD, testListEvalA, testListEvalB, testLoadLibrary, testLoadScript, testStringListEval, testStringListEvalB, testTTest, testTTestFail

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

JRIClientTest

public JRIClientTest()

Method Details

checkRHome

public static void checkRHome()

createRClient

protected AbstractRClient createRClient()

Specified by:

createRClient in class AbstractRClientTest