Package ubic.basecode.math

Class TestMatrixStats

java.lang.Object
ubic.basecode.math.TestMatrixStats
public class TestMatrixStats extends Object
Author:
pavlidis

  • Constructor Details

    • TestMatrixStats

      public TestMatrixStats()

  • Method Details

    • setUp

      public void setUp() throws Exception
      Throws:
      Exception

    • testColSumsWithMissing

      public void testColSumsWithMissing() throws Exception
      Throws:
      Exception

    • testConvertLog

      public final void testConvertLog()

    • testConvertToLog2Cpm

      public final void testConvertToLog2Cpm()

    • testCorrelationMatrix

      public final void testCorrelationMatrix() throws Exception
      Throws:
      Exception

    • testCorrelationMatrixThreshold

      public final void testCorrelationMatrixThreshold() throws Exception
      Throws:
      Exception

    • testCountsPerMillionWithMissing

      public void testCountsPerMillionWithMissing() throws Exception
      Throws:
      Exception

    • testDoubleStandardize

      public final void testDoubleStandardize()

    • testLogTransform

      public final void testLogTransform()

    • testMax

      public final void testMax()

    • testMin

      public final void testMin()

    • testNan

      public final void testNan()

    • testRbfNormalize

      public final void testRbfNormalize()

    • testSelfSquare

      public final void testSelfSquare()

    • testStandardize

      public final void testStandardize()

    • testCov2Cor

      public final void testCov2Cor() throws Exception
      Throws:
      Exception