Package ubic.basecode.datafilter

Class TestRowMissingFilter

java.lang.Object

ubic.basecode.datafilter.AbstractTestFilter

ubic.basecode.datafilter.TestRowMissingFilter

public class TestRowMissingFilter
extends AbstractTestFilter

See the file test/data/matrix-testing.xls for the validation.

Author:

pavlidis

Field Summary

Fields inherited from class ubic.basecode.datafilter.AbstractTestFilter

testdata, testmissingdata, teststringdata, teststringmissingdata

Constructor Summary

Constructors

Constructor	Description
TestRowMissingFilter()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testFilter()
void	testFilterFraction()
void	testFilterFractionInvalid()
void	testFilterFractionInvalid2()
void	testFilterNoFiltering()
void	testFilterPresentCountInvalid()
void	testFilterStringMatrix()
void	testFilterWithMissing()
void	testFilterWithMissingLessStringent()
void	testFilterWithMissingLowMaxFraction()
void	testMaxFractionRemovedInvalid()

Methods inherited from class ubic.basecode.datafilter.AbstractTestFilter

tearDown

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TestRowMissingFilter

public TestRowMissingFilter()

Method Details

setUp

public void setUp()
           throws Exception

Overrides:

setUp in class AbstractTestFilter

Throws:

Exception

testFilter

public void testFilter()

testFilterFraction

public void testFilterFraction()

testFilterFractionInvalid

public void testFilterFractionInvalid()

testFilterFractionInvalid2

public void testFilterFractionInvalid2()

testFilterNoFiltering

public void testFilterNoFiltering()

testFilterPresentCountInvalid

public void testFilterPresentCountInvalid()

testFilterStringMatrix

public void testFilterStringMatrix()

testFilterWithMissing

public void testFilterWithMissing()

testFilterWithMissingLessStringent

public void testFilterWithMissingLessStringent()

testFilterWithMissingLowMaxFraction

public void testFilterWithMissingLowMaxFraction()

testMaxFractionRemovedInvalid

public void testMaxFractionRemovedInvalid()