Package ubic.basecode.datafilter

Class TestRowLevelFilter

java.lang.Object
ubic.basecode.datafilter.AbstractTestFilter
ubic.basecode.datafilter.TestRowLevelFilter
public class TestRowLevelFilter extends AbstractTestFilter
Author:
pavlidis

  • Constructor Details

    • TestRowLevelFilter

      public TestRowLevelFilter()

  • Method Details

    • setUp

      public void setUp() throws Exception
      Overrides:
      setUp in class AbstractTestFilter
      Throws:
      Exception

    • testFilterBadFraction

      public final void testFilterBadFraction()

    • testFilterFractionMaxRemoveHighAndLow

      public final void testFilterFractionMaxRemoveHighAndLow()

    • testFilterFractionMaxRemoveHighAndLowBothFraction

      public final void testFilterFractionMaxRemoveHighAndLowBothFraction()

    • testFilterFractionMaxRemoveHighAndLowBothLevels

      public final void testFilterFractionMaxRemoveHighAndLowBothLevels()

    • testFilterFractionMaxRemoveHighAndLowBothLevelsNegLow

      public final void testFilterFractionMaxRemoveHighAndLowBothLevelsNegLow()

    • testFilterFractionMaxRemoveHighAndLowBothLevelsNoNegRemove

      public final void testFilterFractionMaxRemoveHighAndLowBothLevelsNoNegRemove()

    • testFilterFractionMaxRemoveNeg

      public final void testFilterFractionMaxRemoveNeg()

    • testFilterFractionMaxRemoveNegHigh

      public final void testFilterFractionMaxRemoveNegHigh()

    • testFilterMax

      public final void testFilterMax()

    • testFilterMaxFraction

      public final void testFilterMaxFraction()

    • testFilterMaxFractionAll

      public final void testFilterMaxFractionAll()

    • testFilterMaxFractionHigh

      public final void testFilterMaxFractionHigh()

    • testFilterMaxFractionNone

      public final void testFilterMaxFractionNone()

    • testFilterMaxFractionNoneRemoveNeg

      public final void testFilterMaxFractionNoneRemoveNeg()

    • testFilterMaxHigh

      public final void testFilterMaxHigh()

    • testFilterMaxTooHigh

      public final void testFilterMaxTooHigh()

    • testFilterMean

      public final void testFilterMean()

    • testFilterMeanHigh

      public final void testFilterMeanHigh()

    • testFilterMedian

      public final void testFilterMedian()
       mminvalid input: '<'-read.table("testdata.txt", header=T, row.names=1) 
 length(which(apply(mm, 1, median) > 100))

    • testFilterMedianHigh

      public final void testFilterMedianHigh()
       mminvalid input: '<'-read.table("testdata.txt", header=T, row.names=1)
   length(which(apply(mm, 1, median) invalid input: '<' 1000))

    • testFilterMin

      public final void testFilterMin()

    • testFilterMinHigh

      public final void testFilterMinHigh()

    • testFilterNoFilter

      public final void testFilterNoFilter()