Summary

[Summary] [Package List] [Test Cases]

Note: failures are anticipated and checked for with assertions while errors are unanticipated.

Package List

[Summary] [Package List] [Test Cases]

Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.

ubic.basecode.math.linalg

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	QRDecompositionTest	5	0	0	0	100%	0.004 s

ubic.basecode.io

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestByteArrayConverter	17	0	0	0	100%	0.101 s

ubic.basecode.util

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ConfigUtilsTest	13	0	0	0	100%	0.226 s
	TestStringUtil	8	0	0	0	100%	0.008 s
	PrettyPrinterTest	1	0	0	0	100%	0.005 s
	NetUtilsTest	4	0	0	0	100%	3.909 s
	BatchIteratorTest	3	0	0	0	100%	0 s
	DateUtilTest	6	0	0	0	100%	0.057 s
	StringUtilTest	6	0	0	0	100%	0.001 s
	SQLUtilsTest	1	0	0	0	100%	0 s
	FileToolsTest	32	0	0	0	100%	0.074 s

ubic.basecode.dataStructure.params

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ParamGrabberTest	1	0	0	0	100%	0.001 s
	ParameterKeeperTest	1	0	0	0	100%	0.013 s

ubic.basecode.graphics

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	MatrixDisplayTest	4	0	0	0	100%	0.458 s

ubic.basecode.io.writer

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestHistogramWriter	1	0	0	0	100%	0 s
	MatrixWriterTest	3	0	0	0	100%	0.006 s

ubic.basecode.ontology.ncbo

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	AnnotatorClientTest	3	0	0	3	0%	0.001 s

ubic.basecode.math.distribution

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	NormalProbabilityComputerTest	4	0	0	0	100%	0 s
	UniformDensityComputerTest	1	0	0	0	100%	0 s
	TestWishart	1	0	0	0	100%	0.001 s
	HistogramSamplerTest	1	0	0	0	100%	0.005 s
	HistogramTest	2	0	0	0	100%	0.001 s

ubic.basecode.math.linearmodels

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ModeratedTstatTest	6	0	0	0	100%	0.186 s
	MeanVarianceEstimatorTest	5	0	0	0	100%	0.048 s
	DesignMatrixTest	5	0	0	0	100%	0.003 s
	LeastSquaresFitTest	20	0	0	0	100%	9.446 s

ubic.basecode.math.metaanalysis

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestCorrelationEffectMetaAnalysis	9	0	0	0	100%	0.001 s
	MetaAnalysisTest	2	0	0	0	100%	0 s
	TestMeanDifferenceMetaAnalysis	8	0	0	0	100%	0 s

ubic.basecode.util.r

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	RServeClientTest	1	0	0	1	0%	0.325 s
	JRIClientTest	1	0	0	1	0%	0.001 s

ubic.basecode.ontology.jena

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	OntologyLoaderTest	2	0	0	0	100%	0.114 s
	OntologySearchTest	9	0	0	0	100%	7.298 s
	UberonOntologySearchTest	2	0	0	0	100%	21.41 s
	JenaUtilsTest	1	0	0	0	100%	0.606 s

ubic.basecode.dataStructure.graph

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestDirectedGraph	11	0	0	0	100%	0.051 s

ubic.basecode.math

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	CorrelationStatsTest	18	0	0	0	100%	0.093 s
	MultipleTestCorrectionTest	5	0	0	0	100%	0.074 s
	KruskalWallisTest	1	0	0	0	100%	0.001 s
	DistanceTest	12	0	0	0	100%	0.001 s
	TestMatrixStats	15	0	0	0	100%	0.079 s
	TestROC	3	0	0	0	100%	0.050 s
	TestDescriptiveWithMissing	38	0	0	0	100%	0.002 s
	TestRank	14	0	0	0	100%	0.001 s
	StringDistanceTest	16	0	0	0	100%	0.001 s
	TestMathUtil	5	0	0	0	100%	0 s
	PrecisionRecallTest	5	0	0	0	100%	0.001 s
	TestStats	14	0	0	0	100%	0.001 s
	TestSpecFunc	7	0	0	0	100%	0.023 s
	TestMatrixRowStats	6	0	0	0	100%	0.001 s
	TestMatrixNormalizer	2	0	0	0	100%	0.001 s
	TestKSTest	2	0	0	0	100%	0 s
	TestWilcoxon	15	0	0	0	100%	2.310 s
	SingularValueDecompositionTest	1	0	0	0	100%	0.095 s
	RandomChooserTest	7	0	0	0	100%	0.720 s

ubic.basecode.dataStructure.matrix

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	DenseDoubleMatrixTest	39	0	0	0	100%	0.025 s
	DenseDouble3dMatrixTest	4	0	0	0	100%	0.003 s
	SparseRaggedDoubleMatrixTest	10	0	0	0	100%	0.001 s
	RCDoubleMatrix1DTest	3	0	0	0	100%	0 s
	MatrixUtilTest	7	0	0	0	100%	0.001 s
	CompressedSparseDoubleMatrixTest	38	0	0	0	100%	0.063 s
	CompressedNamedBitMatrixTest	9	0	0	0	100%	0 s
	IntegerMatrixTest	16	0	0	0	100%	0.001 s
	StringMatrixTest	4	0	0	0	100%	0.001 s
	SparseDoubleMatrixTest	24	0	0	0	100%	0.002 s
	FastRowAccessDoubleMatrixTest	39	0	0	0	100%	0.017 s

ubic.basecode.io.reader

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestStringMatrixReader	4	0	0	0	100%	0.001 s
	TestMapReader	3	0	0	0	100%	0.002 s
	TestDoubleMatrixReader	15	0	0	0	100%	0.090 s
	HistogramReaderTest	2	0	0	0	100%	0 s
	TestSparseRaggedDouble2DNamedMatrixReader	3	0	0	0	100%	1.020 s
	TestSparseDoubleMatrixReader	2	0	0	0	100%	0.009 s

ubic.basecode.datafilter

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestRowAbsentFilter	9	0	0	0	100%	0.056 s
	TestItemLevelFilter	1	0	0	0	100%	0.002 s
	TestRowMissingFilter	11	0	0	0	100%	0.069 s
	TestRowAffyNameFilter	2	0	0	0	100%	0.005 s
	TestRowNameFilter	4	0	0	0	100%	0.865 s
	TestRowLevelFilter	23	0	0	0	100%	0.120 s

ubic.basecode.ontology

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	OntologyTermTest	5	0	0	0	100%	1.113 s

ubic.basecode.dataStructure

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	BitUtilTest	5	0	0	0	100%	0 s
	StringToStringSetMapTest	6	0	0	0	100%	0.001 s
	DoubleAddingMapTest	1	0	0	0	100%	0 s
	CountingMapTest	6	0	0	0	100%	0 s

ubic.basecode.dataStructure.tree

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	BinaryTreeTest	7	0	0	0	100%	0.001 s

ubic.basecode.io.excel

-	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ExcelUtilTest	3	0	0	0	100%	0.421 s

Test Cases

[Summary] [Package List] [Test Cases]

ModeratedTstatTest

	testLimmaMissing	0.017 s
	testFdist	0 s
	testLimma	0.034 s
	testSqueezeVarB	0.132 s
	testSqueezeVar	0 s
	testSqueezeVarWMissing	0.001 s

TestDirectedGraph

	testDeleteLeaf1	0 s
	testDeleteLeafFail	0 s
	testGetChildren	0 s
	testToString	0 s
	testAddChild	0 s
	testTopoSort	0 s
	testAddParent	0 s
	testDeleteLeafNotLeaf	0 s
	testAddChildFail	0 s
	testAddParentFail	0 s
	testTreeView	0.050 s

TestCorrelationEffectMetaAnalysis

	testRunUFEffect	0 s
	testRunZFEffect	0 s
	testRunZRQval	0 s
	testRunUFZscore	0 s
	testRunZFZscore	0 s
	testRunUFVar	0 s
	testRunURBSV	0 s
	testRunZFVar	0 s
	testRunZRBSV	0 s

TestHistogramWriter

testWriter

0 s

ConfigUtilsTest

	testLoadConfigURL	0.095 s
	testGetConfigBuilderFile	0.080 s
	testGetConfigBuilderString	0.001 s
	testGetConfigBuilderURLNew	0.003 s
	testGetConfigBuilderStringNew	0.001 s
	testLoadConfigString	0.002 s
	testLoadConfigURLNew	0.020 s
	testLoadConfigStringNewName	0.013 s
	testGetConfigBuilderURL	0.001 s
	testLoadConfigStringNew	0.002 s
	testLoadConfigFile	0.002 s
	testGetConfigBuilderFileNew	0.002 s
	testLoadConfigFileNew	0.001 s

MatrixDisplayTest

	testWriteOutAsPNG2	0.419 s
	testWriteOutAsPNG	0.012 s
	testSaveImage	0.006 s
	testSaveImageStandardize	0.019 s

TestStringMatrixReader

	testReadInputStreamRowCount	0 s
	testReadInputStreamGotColName	0 s
	testReadInputStreamGotRowName	0 s
	testReadInputStreamColumnCount	0 s

CorrelationStatsTest

	testSpearmanPvalueA	0 s
	testSpearmanPvalueB	0 s
	testSpearmanPvalueD	0 s
	testSpearmanPvalueE	0.023 s
	testSpearmanPvalueF	0 s
	testSpearmanPvalueG	0.051 s
	testCorrelationForPvalue	0 s
	testCorrelTooSmall	0 s
	testInverseFisherTransform	0 s
	testSpearmanPvalueTDist	0.001 s
	testCorrel	0 s
	testCorrelAsByte	0 s
	testPvalue	0 s
	testSpearmanPvalueA2	0 s
	testSpearmanPvalueD2	0 s
	testSpearmanPvalueEh	0 s
	testSpearmanPvalueEm	0.016 s
	testSpearmanPvalueG2	0 s

TestMapReader

	testRead	0 s
	testReadNoHeader	0 s
	testReadNoHeaderFile	0 s

DenseDoubleMatrixTest

	testConstructFromArray	0 s
	testSubsetRows	0 s
	testToArray	0 s
	testSortByColumnAbsoluteValue	0 s
	testGet	0 s
	testSet	0 s
	testRows2	0 s
	testCopy	0 s
	testGet2	0 s
	testRows	0 s
	testSet2	0 s
	testSize	0 s
	testToString	0 s
	testGetRowByNameFail	0 s
	testGetRowByNameNull	0 s
	testSetIntIntObject	0 s
	testGetRow2	0 s
	testSubsetColumns	0.001 s
	testViewRow	0.001 s
	testColumns	0.001 s
	testGetColRange	0.001 s
	testGetByKeys	0.001 s
	testGetColObj	0.001 s
	testGetColumn	0.001 s
	testIsMissing	0.001 s
	testViewColumn	0.001 s
	testGetColObj2	0.001 s
	testGetObject	0.001 s
	testGetRow	0.001 s
	testGetRowObj	0.001 s
	testGetRowRange	0.001 s
	testGetRowByName	0.001 s
	testIsMissing2	0.001 s
	testGetColByNameFail	0.001 s
	testGetColByNameNull	0.001 s
	testGetRowObj2	0.001 s
	testGetColByName	0.001 s
	testGetRowArrayList2	0.001 s
	testViewRow2	0.001 s

MultipleTestCorrectionTest

	testBenjaminiYekuteliCut	0.009 s
	testBenjaminiHochbergCut	0.012 s
	testBenjaminiHochberg	0.022 s
	testBenjaminiHochbergM	0.019 s
	testBonferroniCut	0.011 s

KruskalWallisTest

testKW

0 s

TestRowAbsentFilter

	testFilterKeepMarginal	0.002 s
	testFilterPresentCountInvalid	0 s
	testFilterWithMissing	0 s
	testFilterNullFlags	0.005 s
	testFilterWithMissingLessStringent	0.012 s
	testFilterFractionInvalid	0.008 s
	testFilterStringMatrix	0.009 s
	testFilterFraction	0.008 s
	testFilter	0.008 s

DistanceTest

	testSpearmanRankCorrelation	0 s
	testCorrelationOfStandardizedDoubleArrayDoubleArray	0 s
	testSpearmanRankCorrelation2	0 s
	testSpearmanRankCorrelation3	0 s
	testManhattanDistance	0 s
	testSpearmanRankCorrelationNaN	0 s
	testEuclDistance	0 s
	testSpearmanOneList1	0 s
	testSpearmanOneList2	0 s
	testSpearmanOneList3	0 s
	testSpearmanOneList4	0 s
	testCorrelationOfStandardizedDoubleArrayListDoubleArrayList	0 s

ParamGrabberTest

test

0 s

DenseDouble3dMatrixTest

	testget	0 s
	testtostring	0.002 s
	testgetcolobj	0 s
	testgetrowobj	0 s

TestMatrixStats

	testRbfNormalize	0 s
	testSelfSquare	0.002 s
	testStandardize	0.007 s
	testCorrelationMatrix	0.011 s
	testMax	0.002 s
	testMin	0.002 s
	testNan	0.003 s
	testColSumsWithMissing	0.003 s
	testLogTransform	0.004 s
	testDoubleStandardize	0.019 s
	testCov2Cor	0.009 s
	testConvertToLog2Cpm	0.002 s
	testConvertLog	0.003 s
	testCountsPerMillionWithMissing	0.002 s
	testCorrelationMatrixThreshold	0.007 s

MatrixWriterTest

	testWriteMatrixB	0 s
	testWriteMatrix	0 s
	testWrite3DMatrix	0.004 s

TestROC

	testBig	0.042 s
	testAroc	0.001 s
	testArocPvalue	0.006 s

NormalProbabilityComputerTest

	testProbabilityDoubleBoolean	0 s
	testProbabilityDoubleBooleanLower	0 s
	testInvalidVariance	0 s
	testProbabilityDouble	0 s

SparseRaggedDoubleMatrixTest

	testSubsetRows	0 s
	testSubsetRowsFail	0 s
	testRows	0 s
	testGetRowMatrix1D	0.001 s
	testGetRowArrayList	0 s
	testColumns	0 s
	testGetColRange	0 s
	testAddrow	0 s
	testGetRow	0 s
	testGetRowRange	0 s

BitUtilTest

	testGet	0 s
	testSet	0 s
	testClear	0 s
	testCount	0 s
	testToBool	0 s

UniformDensityComputerTest

testDensity

0 s

TestDoubleMatrixReader

	testReadChooseRowsBadfileName	0 s
	testReadInputStreamMissingBad	0 s
	testReadInputStreamGotColNameSkipColumn	0 s
	testReadInputStreamRowCount	0 s
	testReadInputStreamGotColName	0 s
	testReadInputStreamGotRowName	0 s
	testSmallNumbers	0.065 s
	testReadInputStreamMissingSpaces	0.011 s
	testReadBad	0.002 s
	testBadFileName	0.001 s
	testReadChooseRowsSkipcols	0.002 s
	testReadBlankCorner	0.003 s
	testReadInputStreamMissing	0.001 s
	testReadChooseRows	0.002 s
	testReadInputStreamColumnCount	0.001 s

TestStringUtil

	testTwoStringHashKey	0 s
	testCsvSplitA	0.003 s
	testCsvSplitB	0.001 s
	testCsvSplitC	0 s
	testCsvSplitD	0 s
	testCsvSplitE	0.001 s
	testCsvSplitF	0 s
	testTwoStringHashKeyB	0 s

RCDoubleMatrix1DTest

	testZSum	0 s
	testAssignAr	0 s
	testAssign	0 s

MetaAnalysisTest

	testFisherCombinePvaluesB	0 s
	testFisherCombinePvalues	0 s

MatrixUtilTest

	testSelectColumnsAndRowsBad	0 s
	testSelectColumns	0 s
	testDropColumn	0 s
	testSelectColumnsAndRows	0 s
	testRemoveMissing1	0 s
	testRemoveMissing2	0 s
	testSelectRows	0 s

OntologyLoaderTest

	testCacheOntologyToDisk	0.104 s
	testHasChanged	0.004 s

MeanVarianceEstimatorTest

	testVoom	0.031 s
	testMeanVarianceNoDesignWithColsRowAllMissing	0 s
	testDuplicateRows	0.014 s
	testInterpolate	0 s
	testMeanVarianceNoDesignWithMissing	0.001 s

TestDescriptiveWithMissing

	testRankInterpolated	0 s
	testKurtosis	0 s
	testCorrelationA	0 s
	testCorrelationB	0 s
	testQuantileInverse	0 s
	testStandardize	0 s
	testSumOfPowerDeviationsA	0 s
	testOptimizedCorrelation	0 s
	testMad	0 s
	testMax	0 s
	testMin	0 s
	testSum	0 s
	testMeanDoubleArB	0 s
	testSumOfInversions	0 s
	testMean	0 s
	testSkew	0 s
	testDurbinWatson	0 s
	testMeanAboveQuantile	0 s
	testSumOfSquares	0 s
	testProduct	0 s
	testGeometricMean	0 s
	testMeanDoubleAr	0 s
	testSampleSkew	0 s
	testQuantile	0 s
	testQuantiles	0 s
	testSampleKurtosis	0 s
	testStandardizeNoVariance	0 s
	testDurbinWatsonTwo	0 s
	testKurtosisList	0 s
	testSumOfSquaredDeviations	0 s
	testMeanEff	0 s
	testSumOfPowers	0 s
	testSampleVariance	0 s
	testWeightedMean	0 s
	testCovariance	0 s
	testMedian	0 s
	testTrimmedMean	0 s
	testDurbinWatsonShort	0 s

RServeClientTest

	- + - [ Detail ]	0 s
-	got: <java.io.IOException: Could not connect to Rserve>, expected: null	-

PrettyPrinterTest

testPrintBeans

0.002 s

OntologySearchTest

	testPersistence	1.556 s
	testOmitDefinitions2	0.174 s
	testOmitDefinitions3	0.057 s
	testOmitDefinitions4	1.842 s
	testOmitBadPredicates2	0.064 s
	testOmitBadPredicates	2.580 s
	testIndexing	0.546 s
	testOmitDefinitions	0.065 s
	testStemming	0.344 s

OntologyTermTest

	testGetParentsHasProperPart	0.064 s
	testGetChildren	0.481 s
	testGetChildrenHasProperPart	0.031 s
	testGetParents	0.263 s
	testRejectNonEnglish	0.261 s

NetUtilsTest

	testFtpFileSize	0.728 s
	testCheckForFile	0.692 s
	testFtpFileSizeDoesntExist	1.439 s
	testDownloadFile	1.048 s

QRDecompositionTest

	testScaledDesign	0 s
	testSingular2	0 s
	test1	0 s
	test3	0.004 s
	test2NoPivoting	0 s

ExcelUtilTest

	testGetSheetFromFile	0.409 s
	testGetSet	0.002 s
	testSetFormula	0.009 s

CompressedSparseDoubleMatrixTest

	testSubsetRows	0.004 s
	testToArray	0.003 s
	testSortByColumnAbsoluteValue	0.007 s
	testGet	0.001 s
	testSet	0.002 s
	testRows2	0.002 s
	testCopy	0.002 s
	testGet2	0.001 s
	testRows	0.002 s
	testSet2	0.001 s
	testSize	0.002 s
	testToString	0.002 s
	testGetRowByNameFail	0.001 s
	testGetRowByNameNull	0.002 s
	testSetIntIntObject	0.001 s
	testGetRow2	0.002 s
	testSubsetColumns	0.002 s
	testViewRow	0.001 s
	testColumns	0 s
	testGetColRange	0.001 s
	testGetByKeys	0.001 s
	testGetColObj	0.001 s
	testGetColumn	0.002 s
	testIsMissing	0.001 s
	testViewColumn	0.001 s
	testGetColObj2	0.001 s
	testGetObject	0.001 s
	testGetRow	0.001 s
	testGetRowObj	0.001 s
	testGetRowRange	0.002 s
	testGetRowByName	0.001 s
	testIsMissing2	0.001 s
	testGetColByNameFail	0.001 s
	testGetColByNameNull	0.002 s
	testGetRowObj2	0.001 s
	testGetColByName	0.001 s
	testGetRowArrayList2	0.002 s
	testViewRow2	0.001 s

UberonOntologySearchTest

	testScore	0.018 s
	testOmitDefinition	0.012 s

TestByteArrayConverter

	testDoubleArrayToByteArrayConversionSpeed	0.005 s
	testByteArrayToBooleans	0.007 s
	testStringToDoubleArrayConversionSpeed	0.010 s
	testByteArrayToDoubleConversionSpeed	0.007 s
	testByteArrayToTabbedString	0.005 s
	testDoubleArrayToBytes	0.006 s
	testIntsToBytes	0.004 s
	testBooleansToLongArray	0.004 s
	testByteArrayToSquareDoubleMatrix	0.005 s
	testByteArrayToDoubles	0.004 s
	testStringArrayToBytes	0.004 s
	testDoubleArrayToDelimitedStringConversionSpeed	0.010 s
	testStringArrayToTabbedBytes	0.008 s
	testObjectToBytes	0.006 s
	testBooleansToByteArray	0.004 s
	testByteArrayToLongs	0.004 s
	testByteArrayToDoubleMatrix	0.004 s

TestRank

	testRankTransformMapDesc	0 s
	testRankTransformDoubleArrayListDesc	0 s
	testRankTransformMap	0 s
	testOrder	0 s
	testRankWithTies	0 s
	testWithNaNs	0 s
	testRankTransformDoubleArrayList	0 s
	testRankWithTiesB	0 s
	testRankWithTiesC	0 s
	testRankWithTiesD	0 s
	testRankWithTiesE	0 s
	testWithNaNs2	0 s
	testWithNaNs3	0 s
	testOrderB	0 s

StringDistanceTest

	testWeightedHammingA	0 s
	testWeightedHammingB	0 s
	testWeightedHammingC	0 s
	testHammingDistance	0 s
	testBadMatch	0 s
	testEditDistanceA	0 s
	testEditDistanceB	0 s
	testEditDistanceC	0 s
	testEditDistanceD	0 s
	testEditDistanceE	0 s
	testEditDistanceF	0 s
	testEditDistanceG	0 s
	testEditDistanceH	0 s
	testWeightedSuffixHammingA	0 s
	testWeightedSuffixHammingB	0 s
	testWeightedSuffixHammingC	0 s

CompressedNamedBitMatrixTest

	testGetOutOfBounds	0 s
	testOverlap	0 s
	testGet	0 s
	testTotalBitCount	0 s
	testOutOfBounds	0 s
	testOutOfBounds2	0 s
	testGetRowBitCount	0 s
	testBitMatrix	0 s
	testBitCount	0 s

TestItemLevelFilter

testFilter

0 s

HistogramReaderTest

	testHistogramReaderIs	0 s
	testHistogramReaderString	0 s

TestRowMissingFilter

	testFilterPresentCountInvalid	0 s
	testFilterWithMissingLowMaxFraction	0.005 s
	testFilterWithMissing	0.005 s
	testFilterWithMissingLessStringent	0.009 s
	testFilterFractionInvalid2	0.008 s
	testFilterFractionInvalid	0.006 s
	testFilterStringMatrix	0.008 s
	testFilterFraction	0.006 s
	testFilter	0.007 s
	testMaxFractionRemovedInvalid	0.005 s
	testFilterNoFiltering	0.006 s

TestMathUtil

	testMax	0 s
	testSumArray	0 s
	testFillRangeDown	0 s
	testFillRange	0 s
	testFillRangeNo	0 s

PrecisionRecallTest

	testAveragePrecisionB	0 s
	testAveragePrecisionWithTie	0 s
	testAveragePrecisionNotInOrder	0 s
	testAveragePrecision	0 s
	testAveragePrecisionBNotInOrder	0 s

TestStats

	testNormalizeDoubleArrayListdouble	0 s
	testCdf	0 s
	testRange	0 s
	testMeanAboveQuantile	0 s
	testCv	0 s
	testCumulateRight	0 s
	testQuantile	0 s
	testIsValidFraction	0 s
	testIsValidFraction2	0 s
	testNumberOfDistinctValues	0 s
	testCumulate	0 s
	testQuantile75	0 s
	testNormalizeDoubleArrayList	0 s
	testNumberOfDistinctValuesNonNA	0 s

TestSparseRaggedDouble2DNamedMatrixReader

	testReadStreamAdjList	0 s
	testReadInputStream	0 s
	testReadStreamAdjListBig	1.020 s

StringToStringSetMapTest

	testExpandedValues	0 s
	testMatrix2	0 s
	testExpandedSize	0 s
	testWhereIs	0 s
	testMatrix	0 s
	testSeenValues	0 s

ParameterKeeperTest

test

0.012 s

BatchIteratorTest

	testBatches	0 s
	testBatchIterator	0 s
	testConcurrentModificationException	0 s

AnnotatorClientTest

	test + - [ Detail ]	0 s
-	This test require -Dncbi.api.key to be set.	-
	testB + - [ Detail ]	0 s
-	This test require -Dncbi.api.key to be set.	-
	testC + - [ Detail ]	0 s
-	This test require -Dncbi.api.key to be set.	-

TestWishart

testNextDoubleMatrix

0 s

TestSparseDoubleMatrixReader

	testReadStream	0 s
	testReadJW	0.006 s

TestSpecFunc

	testdBinom	0 s
	testCumHyperGeometricB	0 s
	testTrigammaInverse	0.021 s
	testCumHyperGeometric	0 s
	testTrigammaInverseB	0.001 s
	testHypergeometric	0 s
	testCumHyperGeometricUT	0 s

DoubleAddingMapTest

test

0 s

TestMatrixRowStats

	testSumOfSquaresDoubleMatrixNamed	0 s
	testMeans	0 s
	testSums	0 s
	testMeans2	0 s
	testStandardDeviations	0 s
	testSumOfSquaresDoubleMatrixNamedDoubleArrayList	0 s

DateUtilTest

	testgetRelative5yearsFromnow	0.048 s
	testRange	0.004 s
	testgetRelative5yearsago	0 s
	testgetRelativeTomorrow	0 s
	testgetRelativeDateDayago	0.001 s
	testRangeBad	0 s

JRIClientTest

	- + - [ Detail ]	0 s
-	got: <[R_HOME environment variable is not set., null]>, expected: every item is not null	-

StringUtilTest

	testMakeUnique	0 s
	testCommonPrefixNone	0 s
	testCommonSuffixNone	0 s
	testCommonPrefix	0 s
	testCommonSuffix	0 s
	testMakeNames	0 s

TestMatrixNormalizer

	testQuantileNormalize	0 s
	testQuantileNormalizeWithMissing	0 s

TestKSTest

	testKSTestTwoSample	0 s
	testKSTestOneSample	0 s

IntegerMatrixTest

	testGetEntry	0 s
	testGet	0 s
	testSet	0 s
	testRows	0 s
	testSize	0 s
	testColumns	0 s
	testSetByKeys	0 s
	testToInteger	0 s
	testGetByKeys	0 s
	testGetColObj	0 s
	testGetColumn	0 s
	testIsMissing	0 s
	testGetObject	0 s
	testGetRow	0 s
	testGetRowObj	0 s
	testSetObj	0 s

TestWilcoxon

	testWilxcoxonPExactB	0 s
	testWilxcoxonPExactC	0 s
	testWilxcoxonPExactD	2.295 s
	testWilxcoxonPGaussB	0.001 s
	testBGaussian	0 s
	testFVolume	0.001 s
	testWilxcoxonPVolume	0.005 s
	testBig	0 s
	testWilxcoxonPGauss	0 s
	testWilcoxonPExactA	0.001 s
	testCGaussian	0 s
	testDVolume	0.001 s
	testAExact	0.004 s
	testWilxcoxonPWithTies	0.001 s
	testEVolume	0 s

SingularValueDecompositionTest

testSingularValueDecomposition

0.093 s

HistogramSamplerTest

testNextSample

0.005 s

StringMatrixTest

	testToString	0 s
	testSubsetColumns	0 s
	testGetColObj	0 s
	testSubset	0 s

DesignMatrixTest

	testInteractionC	0 s
	test2	0 s
	testA	0 s
	testB	0 s
	testInteractionAndRelevel	0.002 s

HistogramTest

	testGetBiggestBinSize	0 s
	testGetApproximateQuantile	0 s

TestRowAffyNameFilter

	testStringFilter	0.002 s
	testFilter	0 s

RandomChooserTest

	testChooseRandomDeck	0.017 s
	testRepeatSubset	0.306 s
	testChooserandomInts	0.017 s
	testChooserandomWrep	0 s
	testRandomSubset	0 s
	testChooserandomInt	0.043 s
	testRepeat	0.335 s

SQLUtilsTest

testBlobToString

0 s

TestRowNameFilter

	testFilterString	0.751 s
	testFilterExclude	0.006 s
	testFilter	0.013 s
	testFilterStringExclude	0.012 s

CountingMapTest

	testSummation	0 s
	testCount	0 s
	testSeen	0 s
	testIncrement	0 s
	testSortedKeyList	0 s
	testSortedKeyListBoolean	0 s

FileToolsTest

	testHasImageExtension	0 s
	testTestDir	0 s
	testGetWithoutExtension	0 s
	testGetLines	0 s
	testTouch	0 s
	testListDirectoryFiles	0.022 s
	testAddImageExtension	0.001 s
	testChangeExtension	0.001 s
	testDeleteFilesAndDir	0.007 s
	testCleanFileName	0 s
	testgetStringListFromFile	0.002 s
	testGetWithoutExtensionB	0.001 s
	testGetWithoutExtensionC	0.001 s
	testResourcetoPath	0.001 s
	testCleanFileNameErr	0.001 s
	testIsGZipped	0.001 s
	testUnGzipFile	0.003 s
	testCopyFileFailOnDirectoryOutput	0.002 s
	testTestFileString	0.001 s
	testGetCompressedFile	0.003 s
	testCopyFile	0.002 s
	testGetExtension	0.002 s
	testCheckPathIsReadableFile	0.002 s
	testIsZipped	0.001 s
	testAddDataExtension	0.002 s
	testGetCompressedFileZip	0.003 s
	testTestFileFile	0.001 s
	testCheckPathIsReadableFileNot	0.001 s
	testCopyFileFailOnDirectoryInput	0.001 s
	testGetInputStreamFromPlainOrCompressedFile	0.001 s
	testHasXMLExtension	0.001 s
	testUnzipFile	0.005 s

SparseDoubleMatrixTest

	testSubsetCols	0 s
	testSubsetRows	0 s
	testToArray	0 s
	testGet	0 s
	testSet	0 s
	testCopy	0 s
	testRows	0 s
	testSize	0 s
	testToString	0 s
	testGetRowArrayList	0 s
	testViewRow	0 s
	testColumns	0 s
	testGetColRange	0 s
	testGetByKeys	0 s
	testGetColObj	0 s
	testGetColumn	0 s
	testIsMissing	0 s
	testViewColumn	0 s
	testGetObject	0 s
	testGetRow	0 s
	testGetRowObj	0 s
	testGetRowRange	0 s
	testGetRowByName	0 s
	testGetColByName	0 s

LeastSquaresFitTest

	testTwoWayAnovaUnfittable	0.002 s
	testThreeWaySingular	0.171 s
	testEstrogen	4.261 s
	testVectorWeightedRegress	0 s
	testNHBE	4.822 s
	testLSFTwoLevels2	0.034 s
	testLSFTwoLevels3	0.048 s
	testSingular2	0.009 s
	testVectorWeightedRegressWithMissing	0.006 s
	testVectorRegress	0 s
	testLSFThreeLevelsOneContinuousWithMissing3	0.006 s
	testTwoWayAnovaWithInteractions	0.007 s
	testLSFTwoLevels	0.006 s
	testOneWayAnova	0.027 s
	testTwoWayTwoLevelsOneContinousInteractionC	0.005 s
	testLSFThreeLevelsOnecontinous2	0.002 s
	testMatrixWeightedRegress	0.001 s
	testSingular	0.022 s
	testLSFTwoLevelsOneContinuous	0.007 s
	testLSFOneContinuousWithMissing3	0.006 s

JenaUtilsTest

testInferenceCapabilities

0.604 s

TestMeanDifferenceMetaAnalysis

	testRunRandomE	0 s
	testRunRandomZ	0 s
	testRunFixedE	0 s
	testRunFixedQ	0 s
	testRunFixedZ	0 s
	testRunRandomBSV	0 s
	testRunRandomVar	0 s
	testRunFixedVar	0 s

FastRowAccessDoubleMatrixTest

	testConstructFromArray	0 s
	testSubsetRows	0 s
	testToArray	0 s
	testSortByColumnAbsoluteValue	0 s
	testGet	0 s
	testSet	0 s
	testRows2	0 s
	testCopy	0 s
	testGet2	0 s
	testRows	0 s
	testSet2	0 s
	testSize	0 s
	testToString	0 s
	testGetRowByNameFail	0 s
	testGetRowByNameNull	0 s
	testSetIntIntObject	0 s
	testGetRow2	0 s
	testSubsetColumns	0 s
	testViewRow	0 s
	testColumns	0 s
	testGetColRange	0 s
	testGetByKeys	0 s
	testGetColObj	0 s
	testGetColumn	0 s
	testIsMissing	0 s
	testViewColumn	0.001 s
	testGetColObj2	0.001 s
	testGetObject	0.001 s
	testGetRow	0 s
	testGetRowObj	0 s
	testGetRowRange	0.001 s
	testGetRowByName	0.001 s
	testIsMissing2	0.001 s
	testGetColByNameFail	0.001 s
	testGetColByNameNull	0.001 s
	testGetRowObj2	0.001 s
	testGetColByName	0.001 s
	testGetRowArrayList2	0.001 s
	testViewRow2	0.001 s

BinaryTreeTest

	testGetRight	0 s
	testInsertRight	0 s
	testGetLeft	0 s
	testGetRoot	0 s
	testInsertLeft	0 s
	testIsLeaf	0 s
	testIsEmpty	0 s

TestRowLevelFilter

	testFilterMinHigh	0.001 s
	testFilterFractionMaxRemoveHighAndLowBothFraction	0.001 s
	testFilterMaxTooHigh	0 s
	testFilterMedian	0 s
	testFilterNoFilter	0 s
	testFilterFractionMaxRemoveHighAndLowBothLevelsNegLow	0 s
	testFilterFractionMaxRemoveNegHigh	0.003 s
	testFilterMax	0.007 s
	testFilterMin	0.007 s
	testFilterMaxFractionNoneRemoveNeg	0.005 s
	testFilterMedianHigh	0.007 s
	testFilterFractionMaxRemoveHighAndLowBothLevelsNoNegRemove	0.008 s
	testFilterFractionMaxRemoveNeg	0.008 s
	testFilterMaxFractionAll	0.008 s
	testFilterFractionMaxRemoveHighAndLowBothLevels	0.006 s
	testFilterMaxFraction	0.007 s
	testFilterBadFraction	0.007 s
	testFilterMaxFractionHigh	0.007 s
	testFilterMaxFractionNone	0.006 s
	testFilterFractionMaxRemoveHighAndLow	0.005 s
	testFilterMeanHigh	0.006 s
	testFilterMean	0.006 s
	testFilterMaxHigh	0.005 s

Failure Details

[Summary] [Package List] [Test Cases]

-	skipped: got: <java.io.IOException: Could not connect to Rserve>, expected: null
	test
-	skipped: This test require -Dncbi.api.key to be set.
	testB
-	skipped: This test require -Dncbi.api.key to be set.
	testC
-	skipped: This test require -Dncbi.api.key to be set.
-	skipped: got: <[R_HOME environment variable is not set., null]>, expected: every item is not null