Surefire Report

Summary

[Summary] [Package List] [Test Cases]

Note: failures are anticipated and checked for with assertions while errors are unanticipated.

Package List

[Summary] [Package List] [Test Cases]

Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.

ubic.basecode.io

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestByteArrayConverter	15	0	0	0	100%	0.101

ubic.basecode.math.linalg

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	QRDecompositionTest	5	0	0	0	100%	0.007

ubic.basecode.util

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	NetUtilsTest	4	0	0	0	100%	3.786
	TestStringUtil	8	0	0	0	100%	0.014
	BatchIteratorTest	3	0	0	0	100%	0.062
	ConfigUtilsTest	13	0	0	0	100%	1.159
	PrettyPrinterTest	1	0	0	0	100%	0.001
	DateUtilTest	6	0	0	0	100%	0.009
	SQLUtilsTest	1	0	0	0	100%	0.001
	FileToolsTest	32	0	0	0	100%	0.077
	StringUtilTest	5	0	0	0	100%	0.001

ubic.basecode.dataStructure.params

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ParamGrabberTest	1	0	0	0	100%	0
	ParameterKeeperTest	1	0	0	0	100%	0.254

ubic.basecode.graphics

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	MatrixDisplayTest	4	0	0	0	100%	0.229

ubic.basecode.io.writer

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestHistogramWriter	1	0	0	0	100%	0.001
	MatrixWriterTest	3	0	0	0	100%	0.002

ubic.basecode.ontology.ncbo

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	AnnotatorClientTest	3	0	0	3	0%	0.003

ubic.basecode.math.distribution

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	HistogramSamplerTest	1	0	0	0	100%	0.016
	HistogramTest	2	0	0	0	100%	0
	UniformDensityComputerTest	1	0	0	0	100%	0.001
	TestWishart	1	0	0	0	100%	0
	NormalProbabilityComputerTest	4	0	0	0	100%	0.001

ubic.basecode.math.linearmodels

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	DesignMatrixTest	5	0	0	0	100%	0.001
	ModeratedTstatTest	6	0	0	0	100%	0.402
	LeastSquaresFitTest	20	0	0	0	100%	10.463
	MeanVarianceEstimatorTest	5	0	0	0	100%	0.044

ubic.basecode.util.r

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	JRIClientTest	21	0	0	0	100%	0.022
	RServeClientTest	21	0	0	0	100%	6.47

ubic.basecode.math.metaanalysis

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	MetaAnalysisTest	2	0	0	0	100%	0
	TestCorrelationEffectMetaAnalysis	9	0	0	0	100%	0
	TestMeanDifferenceMetaAnalysis	8	0	0	0	100%	0

ubic.basecode.ontology.jena

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	JenaUtilsTest	1	0	0	0	100%	0.174
	UberonOntologySearchTest	2	0	0	0	100%	26.952
	OntologyLoaderTest	2	0	0	0	100%	0.114
	OntologySearchTest	9	0	0	0	100%	4.148

ubic.basecode.dataStructure.graph

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestDirectedGraph	11	0	0	0	100%	0.339

ubic.basecode.math

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestRank	14	0	0	0	100%	0
	DistanceTest	12	0	0	0	100%	0
	SingularValueDecompositionTest	1	0	0	0	100%	0.081
	RandomChooserTest	7	0	0	0	100%	1.467
	TestROC	3	0	0	0	100%	0.069
	TestKSTest	2	0	0	0	100%	0
	TestMatrixNormalizer	2	0	0	0	100%	0.008
	StringDistanceTest	16	0	0	0	100%	0.001
	TestStats	14	0	0	0	100%	0.001
	PrecisionRecallTest	5	0	0	0	100%	0.001
	MultipleTestCorrectionTest	5	0	0	0	100%	0.135
	TestMathUtil	5	0	0	0	100%	0
	TestSpecFunc	7	0	0	0	100%	0.024
	TestMatrixStats	15	0	0	0	100%	0.029
	TestMatrixRowStats	6	0	0	0	100%	0.014
	TestWilcoxon	15	0	0	0	100%	3.231
	CorrelationStatsTest	18	0	0	0	100%	0.069
	KruskalWallisTest	1	0	0	0	100%	0.001
	TestDescriptiveWithMissing	45	0	0	0	100%	0.001

ubic.basecode.dataStructure.matrix

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	IntegerMatrixTest	16	0	0	0	100%	0.001
	SparseDoubleMatrixTest	24	0	0	0	100%	0.017
	StringMatrixTest	4	0	0	0	100%	0.006
	CompressedSparseDoubleMatrixTest	38	0	0	0	100%	0.124
	DenseDoubleMatrixTest	39	0	0	0	100%	0.058
	CompressedNamedBitMatrixTest	9	0	0	0	100%	0.001
	DenseDouble3dMatrixTest	4	0	0	0	100%	0.002
	FastRowAccessDoubleMatrixTest	39	0	0	0	100%	0.05
	MatrixUtilTest	7	0	0	0	100%	0.008
	SparseRaggedDoubleMatrixTest	10	0	0	0	100%	0.018
	RCDoubleMatrix1DTest	3	0	0	0	100%	0.002

ubic.basecode.io.reader

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestMapReader	3	0	0	0	100%	0
	TestSparseRaggedDouble2DNamedMatrixReader	3	0	0	0	100%	0.63
	TestSparseDoubleMatrixReader	2	0	0	0	100%	0.002
	HistogramReaderTest	2	0	0	0	100%	0.001
	TestDoubleMatrixReader	15	0	0	0	100%	0.133
	TestStringMatrixReader	4	0	0	0	100%	0.001

ubic.basecode.datafilter

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	TestRowMissingFilter	11	0	0	0	100%	0.021
	TestRowAbsentFilter	9	0	0	0	100%	0.058
	TestRowAffyNameFilter	2	0	0	0	100%	0.006
	TestItemLevelFilter	1	0	0	0	100%	0
	TestRowNameFilter	4	0	0	0	100%	0.015
	TestRowLevelFilter	23	0	0	0	100%	0.069

ubic.basecode.ontology

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	OntologyTermTest	5	0	0	0	100%	3.723

ubic.basecode.dataStructure

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	StringToStringSetMapTest	6	0	0	0	100%	0
	CountingMapTest	6	0	0	0	100%	0.002
	BitUtilTest	5	0	0	0	100%	0
	DoubleAddingMapTest	1	0	0	0	100%	0.001

ubic.basecode.dataStructure.tree

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	BinaryTreeTest	7	0	0	0	100%	0

ubic.basecode.io.excel

	Class	Tests	Errors	Failures	Skipped	Success Rate	Time
	ExcelUtilTest	3	0	0	0	100%	0.23

Test Cases

[Summary] [Package List] [Test Cases]

TestHistogramWriter

testWriter

0

TestRank

	testRankTransformMapDesc	0
	testRankTransformDoubleArrayListDesc	0
	testRankTransformMap	0
	testOrder	0
	testRankWithTies	0
	testWithNaNs	0
	testRankTransformDoubleArrayList	0
	testRankWithTiesB	0
	testRankWithTiesC	0
	testRankWithTiesD	0
	testRankWithTiesE	0
	testWithNaNs2	0
	testWithNaNs3	0
	testOrderB	0

TestRowMissingFilter

	testFilterPresentCountInvalid	0
	testFilterWithMissingLowMaxFraction	0.002
	testFilterWithMissing	0.001
	testFilterWithMissingLessStringent	0.002
	testFilterFractionInvalid2	0.002
	testFilterFractionInvalid	0.002
	testFilterStringMatrix	0.002
	testFilterFraction	0.002
	testFilter	0.002
	testMaxFractionRemovedInvalid	0.002
	testFilterNoFiltering	0.002

DesignMatrixTest

	testInteractionC	0.001
	test2	0
	testA	0
	testB	0
	testInteractionAndRelevel	0

TestMapReader

	testRead	0
	testReadNoHeader	0
	testReadNoHeaderFile	0

TestSparseRaggedDouble2DNamedMatrixReader

	testReadStreamAdjList	0
	testReadInputStream	0
	testReadStreamAdjListBig	0.63

DistanceTest

	testSpearmanRankCorrelation	0
	testCorrelationOfStandardizedDoubleArrayDoubleArray	0
	testSpearmanRankCorrelation2	0
	testSpearmanRankCorrelation3	0
	testManhattanDistance	0
	testSpearmanRankCorrelationNaN	0
	testEuclDistance	0
	testSpearmanOneList1	0
	testSpearmanOneList2	0
	testSpearmanOneList3	0
	testSpearmanOneList4	0
	testCorrelationOfStandardizedDoubleArrayListDoubleArrayList	0

TestRowAbsentFilter

	testFilterKeepMarginal	0.008
	testFilterPresentCountInvalid	0.005
	testFilterWithMissing	0.008
	testFilterNullFlags	0.008
	testFilterWithMissingLessStringent	0.008
	testFilterFractionInvalid	0.004
	testFilterStringMatrix	0.004
	testFilterFraction	0.006
	testFilter	0.004

JRIClientTest

	testExec	0.006
	testListEvalA	0
	testListEvalB	0
	testExecError	0
	testDataFrameA	0.001
	testAssignAndRetrieveMatrix	0
	testAnovaA	0.001
	testAnovaB	0.001
	testAnovaC	0
	testAnovaD	0.001
	testAnovaE	0.001
	testAnovaF	0.001
	testLimmaA	0.001
	testExecDoubleArray	0
	testAssignAndRetrieveMatrixB	0.001
	testAssignAndRetrieveMatrixD	0.003
	testLinearModelA	0
	testLinearModelB	0.001
	testLinearModelC	0.001
	testLinearModelD	0
	testStringListEvalB	0

TestRowAffyNameFilter

	testStringFilter	0.002
	testFilter	0.004

SingularValueDecompositionTest

testSingularValueDecomposition

0.081

RandomChooserTest

	testChooseRandomDeck	0.048
	testRepeatSubset	0.784
	testChooserandomInts	0.018
	testChooserandomWrep	0.001
	testRandomSubset	0.001
	testChooserandomInt	0.069
	testRepeat	0.545

TestROC

	testBig	0.065
	testAroc	0
	testArocPvalue	0.004

HistogramSamplerTest

testNextSample

0.016

IntegerMatrixTest

	testGetEntry	0
	testGet	0
	testSet	0
	testRows	0
	testSize	0
	testColumns	0
	testSetByKeys	0
	testToInteger	0
	testGetByKeys	0
	testGetColObj	0
	testGetColumn	0
	testIsMissing	0
	testGetObject	0
	testGetRow	0
	testGetRowObj	0
	testSetObj	0.001

SparseDoubleMatrixTest

	testSubsetCols	0.002
	testSubsetRows	0.001
	testToArray	0.001
	testGet	0.001
	testSet	0.001
	testCopy	0.001
	testRows	0.001
	testSize	0
	testToString	0.001
	testGetRowArrayList	0.001
	testViewRow	0
	testColumns	0.001
	testGetColRange	0
	testGetByKeys	0.001
	testGetColObj	0
	testGetColumn	0.001
	testIsMissing	0.001
	testViewColumn	0
	testGetObject	0.001
	testGetRow	0
	testGetRowObj	0
	testGetRowRange	0.001
	testGetRowByName	0
	testGetColByName	0.001

RServeClientTest

	testExec	0.319
	testListEvalA	0.309
	testListEvalB	0.308
	testExecError	0.307
	testDataFrameA	0.308
	testAssignAndRetrieveMatrix	0.308
	testAnovaA	0.306
	testAnovaB	0.306
	testAnovaC	0.31
	testAnovaD	0.306
	testAnovaE	0.307
	testAnovaF	0.305
	testLimmaA	0.306
	testExecDoubleArray	0.307
	testAssignAndRetrieveMatrixB	0.306
	testAssignAndRetrieveMatrixD	0.307
	testLinearModelA	0.306
	testLinearModelB	0.306
	testLinearModelC	0.306
	testLinearModelD	0.306
	testStringListEvalB	0.318

JenaUtilsTest

testInferenceCapabilities

0.173

NetUtilsTest

	testFtpFileSize	0.819
	testCheckForFile	0.708
	testFtpFileSizeDoesntExist	1.26
	testDownloadFile	0.999

HistogramTest

	testGetBiggestBinSize	0
	testGetApproximateQuantile	0

TestKSTest

	testKSTestTwoSample	0
	testKSTestOneSample	0

StringMatrixTest

	testToString	0.002
	testSubsetColumns	0.001
	testGetColObj	0.001
	testSubset	0.002

ModeratedTstatTest

	testLimmaMissing	0.122
	testFdist	0.001
	testLimma	0.058
	testSqueezeVarB	0.221
	testSqueezeVar	0
	testSqueezeVarWMissing	0

TestSparseDoubleMatrixReader

	testReadStream	0
	testReadJW	0.001

TestMatrixNormalizer

	testQuantileNormalize	0.004
	testQuantileNormalizeWithMissing	0.004

StringToStringSetMapTest

	testExpandedValues	0
	testMatrix2	0
	testExpandedSize	0
	testWhereIs	0
	testMatrix	0
	testSeenValues	0

StringDistanceTest

	testWeightedHammingA	0
	testWeightedHammingB	0
	testWeightedHammingC	0
	testHammingDistance	0
	testBadMatch	0
	testEditDistanceA	0
	testEditDistanceB	0
	testEditDistanceC	0
	testEditDistanceD	0
	testEditDistanceE	0
	testEditDistanceF	0
	testEditDistanceG	0
	testEditDistanceH	0
	testWeightedSuffixHammingA	0
	testWeightedSuffixHammingB	0
	testWeightedSuffixHammingC	0

TestStats

	testNormalizeDoubleArrayListdouble	0
	testCdf	0
	testRange	0
	testMeanAboveQuantile	0
	testCv	0
	testCumulateRight	0
	testQuantile	0
	testIsValidFraction	0
	testIsValidFraction2	0
	testNumberOfDistinctValues	0
	testCumulate	0
	testQuantile75	0
	testNormalizeDoubleArrayList	0
	testNumberOfDistinctValuesNonNA	0

TestItemLevelFilter

testFilter

0

LeastSquaresFitTest

	testTwoWayAnovaUnfittable	0.001
	testThreeWaySingular	0.078
	testEstrogen	4.718
	testVectorWeightedRegress	0.001
	testNHBE	5.541
	testLSFTwoLevels2	0.03
	testLSFTwoLevels3	0.026
	testSingular2	0.003
	testVectorWeightedRegressWithMissing	0.005
	testVectorRegress	0
	testLSFThreeLevelsOneContinuousWithMissing3	0.003
	testTwoWayAnovaWithInteractions	0.004
	testLSFTwoLevels	0.003
	testOneWayAnova	0.016
	testTwoWayTwoLevelsOneContinousInteractionC	0.005
	testLSFThreeLevelsOnecontinous2	0.003
	testMatrixWeightedRegress	0.001
	testSingular	0.015
	testLSFTwoLevelsOneContinuous	0.005
	testLSFOneContinuousWithMissing3	0.004

CompressedSparseDoubleMatrixTest

	testSubsetRows	0.02
	testToArray	0.003
	testSortByColumnAbsoluteValue	0.016
	testGet	0.003
	testSet	0.002
	testRows2	0.002
	testCopy	0.004
	testGet2	0.002
	testRows	0.003
	testSet2	0.001
	testSize	0.002
	testToString	0.004
	testGetRowByNameFail	0.002
	testGetRowByNameNull	0.002
	testSetIntIntObject	0.003
	testGetRow2	0.003
	testSubsetColumns	0.002
	testViewRow	0.004
	testColumns	0.002
	testGetColRange	0.002
	testGetByKeys	0.002
	testGetColObj	0.002
	testGetColumn	0.002
	testIsMissing	0.004
	testViewColumn	0.003
	testGetColObj2	0.003
	testGetObject	0.004
	testGetRow	0.002
	testGetRowObj	0.002
	testGetRowRange	0.002
	testGetRowByName	0.002
	testIsMissing2	0.003
	testGetColByNameFail	0.002
	testGetColByNameNull	0.002
	testGetRowObj2	0.002
	testGetColByName	0.002
	testGetRowArrayList2	0.001
	testViewRow2	0.002

TestStringUtil

	testTwoStringHashKey	0
	testCsvSplitA	0.011
	testCsvSplitB	0
	testCsvSplitC	0.001
	testCsvSplitD	0
	testCsvSplitE	0.001
	testCsvSplitF	0.001
	testTwoStringHashKeyB	0

BatchIteratorTest

	testBatches	0.006
	testBatchIterator	0
	testConcurrentModificationException	0.001

PrecisionRecallTest

	testAveragePrecisionB	0
	testAveragePrecisionWithTie	0
	testAveragePrecisionNotInOrder	0
	testAveragePrecision	0
	testAveragePrecisionBNotInOrder	0

HistogramReaderTest

	testHistogramReaderIs	0
	testHistogramReaderString	0

DenseDoubleMatrixTest

	testConstructFromArray	0
	testSubsetRows	0
	testToArray	0.001
	testSortByColumnAbsoluteValue	0.009
	testGet	0.002
	testSet	0.001
	testRows2	0.002
	testCopy	0.002
	testGet2	0.001
	testRows	0.001
	testSet2	0.001
	testSize	0.002
	testToString	0.001
	testGetRowByNameFail	0.002
	testGetRowByNameNull	0.001
	testSetIntIntObject	0.002
	testGetRow2	0.001
	testSubsetColumns	0.001
	testViewRow	0.001
	testColumns	0.001
	testGetColRange	0.002
	testGetByKeys	0.001
	testGetColObj	0.001
	testGetColumn	0.001
	testIsMissing	0.002
	testViewColumn	0.002
	testGetColObj2	0.001
	testGetObject	0.001
	testGetRow	0.002
	testGetRowObj	0.001
	testGetRowRange	0.001
	testGetRowByName	0.001
	testIsMissing2	0.002
	testGetColByNameFail	0.001
	testGetColByNameNull	0.002
	testGetRowObj2	0.001
	testGetColByName	0.001
	testGetRowArrayList2	0.001
	testViewRow2	0.001

ConfigUtilsTest

	testLoadConfigURL	0.999
	testGetConfigBuilderFile	0.112
	testGetConfigBuilderString	0.002
	testGetConfigBuilderURLNew	0.021
	testGetConfigBuilderStringNew	0.002
	testLoadConfigString	0.002
	testLoadConfigURLNew	0.001
	testLoadConfigStringNewName	0.012
	testGetConfigBuilderURL	0.001
	testLoadConfigStringNew	0.002
	testLoadConfigFile	0.001
	testGetConfigBuilderFileNew	0.001
	testLoadConfigFileNew	0.002

UniformDensityComputerTest

testDensity

0

MultipleTestCorrectionTest

	testBenjaminiYekuteliCut	0.027
	testBenjaminiHochbergCut	0.022
	testBenjaminiHochberg	0.03
	testBenjaminiHochbergM	0.034
	testBonferroniCut	0.021

ExcelUtilTest

	testGetSheetFromFile	0.226
	testGetSet	0.001
	testSetFormula	0.003

TestMathUtil

	testMax	0
	testSumArray	0
	testFillRangeDown	0
	testFillRange	0
	testFillRangeNo	0

CompressedNamedBitMatrixTest

	testGetOutOfBounds	0
	testOverlap	0
	testGet	0
	testTotalBitCount	0
	testOutOfBounds	0
	testOutOfBounds2	0
	testGetRowBitCount	0
	testBitMatrix	0
	testBitCount	0

OntologyTermTest

	testGetParentsHasProperPart	0.881
	testGetChildren	1.549
	testGetChildrenHasProperPart	0.073
	testGetParents	0.493
	testRejectNonEnglish	0.692

MatrixWriterTest

	testWriteMatrixB	0
	testWriteMatrix	0
	testWrite3DMatrix	0.001

TestWishart

testNextDoubleMatrix

0

MetaAnalysisTest

	testFisherCombinePvaluesB	0
	testFisherCombinePvalues	0

UberonOntologySearchTest

	testScore	0.02
	testOmitDefinition	0.014

DenseDouble3dMatrixTest

	testget	0
	testtostring	0.002
	testgetcolobj	0
	testgetrowobj	0

TestRowNameFilter

	testFilterString	0.001
	testFilterExclude	0.003
	testFilter	0.005
	testFilterStringExclude	0.005

TestDirectedGraph

	testDeleteLeaf1	0
	testDeleteLeafFail	0
	testGetChildren	0
	testToString	0
	testAddChild	0
	testTopoSort	0
	testAddParent	0
	testDeleteLeafNotLeaf	0
	testAddChildFail	0.001
	testAddParentFail	0.001
	testTreeView	0.335

PrettyPrinterTest

testPrintBeans

0

TestSpecFunc

	testdBinom	0
	testCumHyperGeometricB	0
	testTrigammaInverse	0.023
	testCumHyperGeometric	0
	testTrigammaInverseB	0.001
	testHypergeometric	0
	testCumHyperGeometricUT	0

OntologyLoaderTest

	testCacheOntologyToDisk	0.087
	testHasChanged	0.006

TestMatrixStats

	testRbfNormalize	0
	testSelfSquare	0
	testStandardize	0
	testCorrelationMatrix	0.002
	testMax	0.001
	testMin	0.001
	testNan	0.001
	testColSumsWithMissing	0
	testLogTransform	0.001
	testDoubleStandardize	0.009
	testCov2Cor	0.005
	testConvertToLog2Cpm	0.002
	testConvertLog	0.001
	testCountsPerMillionWithMissing	0.001
	testCorrelationMatrixThreshold	0.005

BinaryTreeTest

	testGetRight	0
	testInsertRight	0
	testGetLeft	0
	testGetRoot	0
	testInsertLeft	0
	testIsLeaf	0
	testIsEmpty	0

TestMatrixRowStats

	testSumOfSquaresDoubleMatrixNamed	0
	testMeans	0.003
	testSums	0.003
	testMeans2	0.003
	testStandardDeviations	0.002
	testSumOfSquaresDoubleMatrixNamedDoubleArrayList	0.003

DateUtilTest

	testgetRelative5yearsFromnow	0.004
	testRange	0.002
	testgetRelative5yearsago	0
	testgetRelativeTomorrow	0
	testgetRelativeDateDayago	0.001
	testRangeBad	0

FastRowAccessDoubleMatrixTest

	testConstructFromArray	0
	testSubsetRows	0
	testToArray	0.002
	testSortByColumnAbsoluteValue	0.005
	testGet	0.003
	testSet	0.001
	testRows2	0.002
	testCopy	0.001
	testGet2	0.001
	testRows	0.002
	testSet2	0.001
	testSize	0.001
	testToString	0.002
	testGetRowByNameFail	0.002
	testGetRowByNameNull	0.001
	testSetIntIntObject	0.002
	testGetRow2	0.001
	testSubsetColumns	0.001
	testViewRow	0.001
	testColumns	0.002
	testGetColRange	0.002
	testGetByKeys	0.001
	testGetColObj	0.001
	testGetColumn	0.001
	testIsMissing	0.002
	testViewColumn	0.002
	testGetColObj2	0.001
	testGetObject	0.001
	testGetRow	0.001
	testGetRowObj	0
	testGetRowRange	0.001
	testGetRowByName	0.001
	testIsMissing2	0.001
	testGetColByNameFail	0
	testGetColByNameNull	0.001
	testGetRowObj2	0.001
	testGetColByName	0.001
	testGetRowArrayList2	0
	testViewRow2	0.001

TestCorrelationEffectMetaAnalysis

	testRunUFEffect	0
	testRunZFEffect	0
	testRunZRQval	0
	testRunUFZscore	0
	testRunZFZscore	0
	testRunUFVar	0
	testRunURBSV	0
	testRunZFVar	0
	testRunZRBSV	0

OntologySearchTest

	testPersistence	0.802
	testOmitDefinitions2	0.179
	testOmitDefinitions3	0.047
	testOmitDefinitions4	1.549
	testOmitBadPredicates2	0.064
	testOmitBadPredicates	0.046
	testIndexing	0.892
	testOmitDefinitions	0.072
	testStemming	0.459

MatrixDisplayTest

	testWriteOutAsPNG2	0.192
	testWriteOutAsPNG	0.012
	testSaveImage	0.007
	testSaveImageStandardize	0.017

TestByteArrayConverter

	testDoubleArrayToByteArrayConversionSpeed	0.013
	testByteArrayToBooleans	0.006
	testStringToDoubleArrayConversionSpeed	0.01
	testByteArrayToDoubleConversionSpeed	0.009
	testByteArrayToTabbedString	0.007
	testDoubleArrayToBytes	0.006
	testIntsToBytes	0.005
	testBooleansToLongArray	0.006
	testByteArrayToDoubles	0.005
	testStringToBytes	0.007
	testDoubleArrayToDelimitedStringConversionSpeed	0.01
	testObjectToBytes	0.005
	testBooleansToByteArray	0.003
	testByteArrayToLongs	0.004
	testByteArrayToDoubleMatrix	0.004

MatrixUtilTest

	testSelectColumnsAndRowsBad	0
	testSelectColumns	0
	testDropColumn	0
	testSelectColumnsAndRows	0.003
	testRemoveMissing1	0.002
	testRemoveMissing2	0.001
	testSelectRows	0.001

TestWilcoxon

	testWilxcoxonPExactB	0
	testWilxcoxonPExactC	0
	testWilxcoxonPExactD	3.206
	testWilxcoxonPGaussB	0
	testBGaussian	0.001
	testFVolume	0.001
	testWilxcoxonPVolume	0.005
	testBig	0
	testWilxcoxonPGauss	0
	testWilcoxonPExactA	0
	testCGaussian	0
	testDVolume	0.002
	testAExact	0.013
	testWilxcoxonPWithTies	0
	testEVolume	0.001

ParamGrabberTest

test

0

QRDecompositionTest

	testScaledDesign	0
	testSingular2	0
	test1	0
	test3	0.006
	test2NoPivoting	0

SparseRaggedDoubleMatrixTest

	testSubsetRows	0.01
	testSubsetRowsFail	0.001
	testRows	0.001
	testGetRowMatrix1D	0.002
	testGetRowArrayList	0.001
	testColumns	0
	testGetColRange	0.001
	testAddrow	0.001
	testGetRow	0
	testGetRowRange	0.001

AnnotatorClientTest

	test + - [ Detail ]	0
	This test require -Dncbi.api.key to be set.
	testB + - [ Detail ]	0
	This test require -Dncbi.api.key to be set.
	testC + - [ Detail ]	0
	This test require -Dncbi.api.key to be set.

ParameterKeeperTest

test

0.253

CorrelationStatsTest

	testSpearmanPvalueA	0
	testSpearmanPvalueB	0
	testSpearmanPvalueD	0
	testSpearmanPvalueE	0.012
	testSpearmanPvalueF	0
	testSpearmanPvalueG	0.046
	testCorrelationForPvalue	0
	testCorrelTooSmall	0
	testInverseFisherTransform	0
	testSpearmanPvalueTDist	0
	testCorrel	0
	testCorrelAsByte	0
	testPvalue	0
	testSpearmanPvalueA2	0
	testSpearmanPvalueD2	0
	testSpearmanPvalueEh	0.001
	testSpearmanPvalueEm	0.009
	testSpearmanPvalueG2	0

KruskalWallisTest

testKW

0

TestDoubleMatrixReader

	testReadChooseRowsBadfileName	0
	testReadInputStreamMissingBad	0
	testReadInputStreamGotColNameSkipColumn	0.001
	testReadInputStreamRowCount	0.002
	testReadInputStreamGotColName	0.001
	testReadInputStreamGotRowName	0.001
	testSmallNumbers	0.095
	testReadInputStreamMissingSpaces	0.018
	testReadBad	0.001
	testBadFileName	0
	testReadChooseRowsSkipcols	0.002
	testReadBlankCorner	0.004
	testReadInputStreamMissing	0.003
	testReadChooseRows	0.003
	testReadInputStreamColumnCount	0.002

TestDescriptiveWithMissing

	testRankInterpolated	0
	testKurtosis	0
	testCorrelationA	0
	testCorrelationB	0
	testQuantileInverse	0
	testStandardize	0
	testIncrementalWeightedUpdate	0
	testSumOfPowerDeviationsA	0
	testOptimizedCorrelation	0
	testMad	0
	testMax	0
	testMin	0
	testSum	0
	testMeanDoubleArB	0
	testSumOfInversions	0
	testLag1	0
	testMean	0
	testSkew	0
	testDurbinWatson	0
	testMeanAboveQuantile	0
	testSumOfSquares	0
	testProduct	0
	testGeometricMean	0
	testMeanDoubleAr	0
	testSampleSkew	0
	testQuantile	0
	testVariance	0
	testQuantiles	0
	testSampleKurtosis	0
	testStandardizeNoVariance	0
	testDurbinWatsonTwo	0
	testKurtosisList	0
	testSumOfSquaredDeviations	0
	testSampleStandardDeviation	0
	testMeanEff	0
	testSumOfPowers	0
	testSampleVariance	0
	testWeightedMean	0
	testCovariance	0
	testIncrementalUpdate	0
	testMedian	0
	testTrimmedMean	0
	testIncrementalUpdateSums	0
	testDurbinWatsonShort	0
	testAutoCorrelation	0

SQLUtilsTest

testBlobToString

0

CountingMapTest

	testSummation	0
	testCount	0
	testSeen	0
	testIncrement	0
	testSortedKeyList	0.001
	testSortedKeyListBoolean	0

RCDoubleMatrix1DTest

	testZSum	0
	testAssignAr	0
	testAssign	0.002

MeanVarianceEstimatorTest

	testVoom	0.027
	testMeanVarianceNoDesignWithColsRowAllMissing	0
	testDuplicateRows	0.014
	testInterpolate	0.001
	testMeanVarianceNoDesignWithMissing	0.001

BitUtilTest

	testGet	0
	testSet	0
	testClear	0
	testCount	0
	testToBool	0

NormalProbabilityComputerTest

	testProbabilityDoubleBoolean	0
	testProbabilityDoubleBooleanLower	0
	testInvalidVariance	0
	testProbabilityDouble	0

DoubleAddingMapTest

test

0

TestStringMatrixReader

	testReadInputStreamRowCount	0
	testReadInputStreamGotColName	0
	testReadInputStreamGotRowName	0
	testReadInputStreamColumnCount	0

FileToolsTest

	testHasImageExtension	0
	testTestDir	0.001
	testGetWithoutExtension	0.001
	testGetLines	0.003
	testTouch	0.002
	testListDirectoryFiles	0.006
	testAddImageExtension	0.001
	testChangeExtension	0.001
	testDeleteFilesAndDir	0.004
	testCleanFileName	0.003
	testgetStringListFromFile	0.003
	testGetWithoutExtensionB	0.001
	testGetWithoutExtensionC	0.001
	testResourcetoPath	0.002
	testCleanFileNameErr	0.002
	testIsGZipped	0.002
	testUnGzipFile	0.004
	testCopyFileFailOnDirectoryOutput	0.003
	testTestFileString	0.001
	testGetCompressedFile	0.003
	testCopyFile	0.002
	testGetExtension	0.001
	testCheckPathIsReadableFile	0.001
	testIsZipped	0.001
	testAddDataExtension	0.002
	testGetCompressedFileZip	0.004
	testTestFileFile	0.001
	testCheckPathIsReadableFileNot	0.001
	testCopyFileFailOnDirectoryInput	0.001
	testGetInputStreamFromPlainOrCompressedFile	0.002
	testHasXMLExtension	0.001
	testUnzipFile	0.016

StringUtilTest

	testMakeRnames	0
	testCommonPrefixNone	0
	testCommonSuffixNone	0
	testCommonPrefix	0
	testCommonSuffix	0

TestMeanDifferenceMetaAnalysis

	testRunRandomE	0
	testRunRandomZ	0
	testRunFixedE	0
	testRunFixedQ	0
	testRunFixedZ	0
	testRunRandomBSV	0
	testRunRandomVar	0
	testRunFixedVar	0

TestRowLevelFilter

	testFilterMinHigh	0.001
	testFilterFractionMaxRemoveHighAndLowBothFraction	0
	testFilterMaxTooHigh	0.003
	testFilterMedian	0.003
	testFilterNoFilter	0.002
	testFilterFractionMaxRemoveHighAndLowBothLevelsNegLow	0.003
	testFilterFractionMaxRemoveNegHigh	0.003
	testFilterMax	0.003
	testFilterMin	0.002
	testFilterMaxFractionNoneRemoveNeg	0.002
	testFilterMedianHigh	0.002
	testFilterFractionMaxRemoveHighAndLowBothLevelsNoNegRemove	0.003
	testFilterFractionMaxRemoveNeg	0.004
	testFilterMaxFractionAll	0.003
	testFilterFractionMaxRemoveHighAndLowBothLevels	0.004
	testFilterMaxFraction	0.004
	testFilterBadFraction	0.004
	testFilterMaxFractionHigh	0.003
	testFilterMaxFractionNone	0.004
	testFilterFractionMaxRemoveHighAndLow	0.003
	testFilterMeanHigh	0.003
	testFilterMean	0.004
	testFilterMaxHigh	0.003

Failure Details

[Summary] [Package List] [Test Cases]

	test
	skipped: This test require -Dncbi.api.key to be set.
	testB
	skipped: This test require -Dncbi.api.key to be set.
	testC
	skipped: This test require -Dncbi.api.key to be set.