Package ubic.basecode.ontology.simple

Class OntologyIndividualSimple

java.lang.Object

ubic.basecode.ontology.simple.AbstractOntologyResourceSimple

ubic.basecode.ontology.simple.OntologyIndividualSimple

All Implemented Interfaces:

Serializable, OntologyIndividual, OntologyResource

public class OntologyIndividualSimple
extends AbstractOntologyResourceSimple
implements OntologyIndividual

Author:

poirigui

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
OntologyIndividualSimple(@Nullable String uri, @Nullable String localName, @Nullable String label, @Nullable OntologyTermSimple instanceOf)	Create a new simple ontology individual.
OntologyIndividualSimple(@Nullable String uri, @Nullable String label, @Nullable OntologyTermSimple instanceOf)

Method Summary

Modifier and Type	Method	Description
@Nullable String	getComment()	A comment for the resource, if available, otherwise null.
@Nullable OntologyTermSimple	getInstanceOf()	Return the term that this is an instance of.
boolean	isObsolete()	Whether the resource is marked as obsolete.

Methods inherited from class ubic.basecode.ontology.simple.AbstractOntologyResourceSimple

equals, getLabel, getLocalName, getUri, hashCode, unwrap

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.model.OntologyResource

getLabel, getLocalName, getUri, unwrap

Constructor Details

OntologyIndividualSimple

public OntologyIndividualSimple(@Nullable String uri,
 @Nullable String label,
 @Nullable OntologyTermSimple instanceOf)

OntologyIndividualSimple

public OntologyIndividualSimple(@Nullable String uri,
 @Nullable String localName,
 @Nullable String label,
 @Nullable OntologyTermSimple instanceOf)

Create a new simple ontology individual.

Parameters:

uri - a URI for the term, of null for a free-text term

label - a label for the term

instanceOf - the term this individual is an instance of which must be simple since this class has to be Serializable.

Method Details

getComment

public @Nullable String getComment()

Description copied from interface: OntologyResource

A comment for the resource, if available, otherwise null.

Specified by:

getComment in interface OntologyResource

isObsolete

public boolean isObsolete()

Description copied from interface: OntologyResource

Whether the resource is marked as obsolete.

Specified by:

isObsolete in interface OntologyResource

getInstanceOf

public @Nullable OntologyTermSimple getInstanceOf()

Description copied from interface: OntologyIndividual

Return the term that this is an instance of.

Specified by:

getInstanceOf in interface OntologyIndividual

Returns: