Package ubic.basecode.ontology.jena

Class ClasspathOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.jena.ClasspathOntologyService

All Implemented Interfaces:

AutoCloseable, OntologyService

public class ClasspathOntologyService
extends AbstractOntologyService

An ontology service that loads an ontology from a classpath resource.

Author:

poirigui

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
ClasspathOntologyService(String name, String classpathResource, boolean ontologyEnabled, @Nullable String cacheName)

Method Summary

Modifier and Type	Method	Description
protected OntologyModel	loadModel(boolean processImports, OntologyService.LanguageLevel languageLevel, OntologyService.InferenceMode inferenceMode)	Delegates the call as to load the model into memory or leave it on disk.
protected OntologyModel	loadModelFromStream(InputStream is, boolean processImports, OntologyService.LanguageLevel languageLevel, OntologyService.InferenceMode inferenceMode)	Load a model from a given input stream.

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, close, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getCacheName, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getOntologyName, getOntologyUrl, getParents, getProcessImports, getResource, getSpec, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyEnabled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Details

ClasspathOntologyService

public ClasspathOntologyService(String name,
 String classpathResource,
 boolean ontologyEnabled,
 @Nullable String cacheName)

Method Details

loadModel

protected OntologyModel loadModel(boolean processImports,
 OntologyService.LanguageLevel languageLevel,
 OntologyService.InferenceMode inferenceMode)
                           throws IOException

Description copied from class: AbstractOntologyService

Delegates the call as to load the model into memory or leave it on disk. Simply delegates to either OntologyLoader.loadMemoryModel( url ); OR OntologyLoader.loadPersistentModel( url, spec );

Specified by:

loadModel in class AbstractOntologyService

Throws:

IOException

loadModelFromStream

protected OntologyModel loadModelFromStream(InputStream is,
 boolean processImports,
 OntologyService.LanguageLevel languageLevel,
 OntologyService.InferenceMode inferenceMode)
                                     throws IOException

Description copied from class: AbstractOntologyService

Load a model from a given input stream.

Specified by:

loadModelFromStream in class AbstractOntologyService

Throws:

IOException