compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• baseCode:baseCode:jar:1.2-SNAPSHOT

  baseCode
  Description: Data structures, math and statistics tools, and utilities that are often needed across projects. URL: https://github.com/pavlidisLab/basecode Project Licenses: The Apache Software License, Version 2.0

  • org.apache.poi:poi:jar:5.2.3 (compile)

    Apache POI - Common
    Description: Apache POI - Java API To Access Microsoft Format Files URL: https://poi.apache.org/ Project Licenses: Apache License, Version 2.0

    • commons-codec:commons-codec:jar:1.15 (compile)

      Apache Commons Codec
      Description: The Apache Commons Codec package contains simple encoder and decoders for various formats such as Base64 and Hexadecimal. In addition to these widely used encoders and decoders, the codec package also maintains a collection of phonetic encoding utilities. URL: https://commons.apache.org/proper/commons-codec/ Project Licenses: Apache License, Version 2.0

    • com.zaxxer:SparseBitSet:jar:1.2 (compile)

      SparseBitSet
      Description: An efficient sparse bitset implementation for Java URL: https://github.com/brettwooldridge/SparseBitSet Project Licenses: The Apache Software License, Version 2.0

    • org.apache.logging.log4j:log4j-api:jar:2.19.0 (compile)

      Apache Log4j API
      Description: The Apache Log4j API URL: https://logging.apache.org/log4j/2.x/log4j-api/ Project Licenses: Apache License, Version 2.0

  • colt:colt:jar:1.2.0 (compile)

    colt
    Description: There is currently no description associated with this project. Project Licenses: No licenses are defined for this project.

    • concurrent:concurrent:jar:1.3.4 (compile)

      Dough Lea's util.concurrent package
      Description: There is currently no description associated with this project. Project Licenses: Public domain, Sun Microsoystems

  • commons-net:commons-net:jar:3.8.0 (compile)

    Apache Commons Net
    Description: Apache Commons Net library contains a collection of network utilities and protocol implementations. Supported protocols include: Echo, Finger, FTP, NNTP, NTP, POP3(S), SMTP(S), Telnet, Whois URL: https://commons.apache.org/proper/commons-net/ Project Licenses: Apache License, Version 2.0

  • org.apache.commons:commons-math3:jar:3.6.1 (compile)

    Apache Commons Math
    Description: The Apache Commons Math project is a library of lightweight, self-contained mathematics and statistics components addressing the most common practical problems not immediately available in the Java programming language or commons-lang. URL: http://commons.apache.org/proper/commons-math/ Project Licenses: Apache License, Version 2.0

  • org.apache.commons:commons-configuration2:jar:2.8.0 (compile)

    Apache Commons Configuration
    Description: Tools to assist in the reading of configuration/preferences files in various formats URL: https://commons.apache.org/proper/commons-configuration/ Project Licenses: Apache License, Version 2.0

    • commons-logging:commons-logging:jar:1.2 (compile)

      Apache Commons Logging
      Description: Apache Commons Logging is a thin adapter allowing configurable bridging to other, well known logging systems. URL: http://commons.apache.org/proper/commons-logging/ Project Licenses: The Apache Software License, Version 2.0

  • org.apache.commons:commons-lang3:jar:3.12.0 (compile)

    Apache Commons Lang
    Description: Apache Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: https://commons.apache.org/proper/commons-lang/ Project Licenses: Apache License, Version 2.0

  • commons-io:commons-io:jar:2.11.0 (compile)

    Apache Commons IO
    Description: The Apache Commons IO library contains utility classes, stream implementations, file filters, file comparators, endian transformation classes, and much more. URL: https://commons.apache.org/proper/commons-io/ Project Licenses: Apache License, Version 2.0

  • org.apache.commons:commons-collections4:jar:4.4 (compile)

    Apache Commons Collections
    Description: The Apache Commons Collections package contains types that extend and augment the Java Collections Framework. URL: https://commons.apache.org/proper/commons-collections/ Project Licenses: Apache License, Version 2.0

  • org.apache.commons:commons-text:jar:1.10.0 (compile)

    Apache Commons Text
    Description: Apache Commons Text is a library focused on algorithms working on strings. URL: https://commons.apache.org/proper/commons-text Project Licenses: Apache License, Version 2.0

  • org.apache.httpcomponents:httpcore:jar:4.4.15 (compile)

    Apache HttpCore
    Description: Apache HttpComponents Core (blocking I/O) URL: http://hc.apache.org/httpcomponents-core-ga Project Licenses: Apache License, Version 2.0

  • org.apache.httpcomponents:httpclient:jar:4.5.13 (compile)

    Apache HttpClient
    Description: Apache HttpComponents Client URL: http://hc.apache.org/httpcomponents-client Project Licenses: Apache License, Version 2.0

  • org.rosuda.REngine:REngine:jar:2.1.0 (compile)

    REngine Java interface to R
    Description: REngine API to access R from Java in a backend-independent way. URL: http://github.com/s-u/REngine Project Licenses: LGPL v2.1

  • org.rosuda.REngine:Rserve:jar:1.8.1 (compile)

    Rserve client back-end for REngine
    Description: Rserve client back-end implementation for REngine to access R from Java via Rserve. URL: http://github.com/s-u/REngine Project Licenses: LGPL v2.1

  • RoSuDA:JRI:jar:0.5-0 (runtime)

    JRI
    Description: There is currently no description associated with this project. Project Licenses: No licenses are defined for this project.

  • RoSuDA:JRIEngine:jar:0.5-0 (compile)

    JRIEngine
    Description: There is currently no description associated with this project. Project Licenses: No licenses are defined for this project.

  • com.googlecode.matrix-toolkits-java:mtj:jar:1.0.4 (compile)

    Matrix Toolkits for Java
    Description: A comprehensive collection of matrix data structures, linear solvers, least squares methods, eigenvalue, and singular value decompositions. URL: https://github.com/fommil/matrix-toolkits-java/ Project Licenses: GNU Lesser General Public License

    • com.github.fommil.netlib:all:pom:1.1.2 (compile)

      all
      Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/all Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:core:jar:1.1.2 (compile)

        core
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/core Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_ref-osx-x86_64:jar:natives:1.1 (compile)

        netlib-native_ref-osx-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/netlib-native_ref-osx-x86_64 Project Licenses: BSD 3 Clause

        • com.github.fommil.netlib:native_ref-java:jar:1.1 (compile)

          native_ref-java
          Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/native_ref-java Project Licenses: BSD 3 Clause

          • com.github.fommil:jniloader:jar:1.1 (compile)

            JniLoader
            Description: Lightweight convenience for loading JNI natives. URL: https://github.com/fommil/jniloader Project Licenses: LGPL

      • com.github.fommil.netlib:netlib-native_ref-linux-x86_64:jar:natives:1.1 (compile)

        netlib-native_ref-linux-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/native_ref-xbuilds/netlib-native_ref-linux-x86_64 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_ref-linux-i686:jar:natives:1.1 (compile)

        netlib-native_ref-linux-i686
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/native_ref-xbuilds/netlib-native_ref-linux-i686 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_ref-win-x86_64:jar:natives:1.1 (compile)

        netlib-native_ref-win-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/netlib-native_ref-win-x86_64 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_ref-win-i686:jar:natives:1.1 (compile)

        netlib-native_ref-win-i686
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/netlib-native_ref-win-i686 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_ref-linux-armhf:jar:natives:1.1 (compile)

        netlib-native_ref-linux-armhf
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_ref/native_ref-xbuilds/netlib-native_ref-linux-armhf Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-osx-x86_64:jar:natives:1.1 (compile)

        netlib-native_system-osx-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/netlib-native_system-osx-x86_64 Project Licenses: BSD 3 Clause

        • com.github.fommil.netlib:native_system-java:jar:1.1 (compile)

          native_system-java
          Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/native_system-java Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-linux-x86_64:jar:natives:1.1 (compile)

        netlib-native_system-linux-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/native_system-xbuilds/netlib-native_system-linux-x86_64 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-linux-i686:jar:natives:1.1 (compile)

        netlib-native_system-linux-i686
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/native_system-xbuilds/netlib-native_system-linux-i686 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-linux-armhf:jar:natives:1.1 (compile)

        netlib-native_system-linux-armhf
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/native_system-xbuilds/netlib-native_system-linux-armhf Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-win-x86_64:jar:natives:1.1 (compile)

        netlib-native_system-win-x86_64
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/netlib-native_system-win-x86_64 Project Licenses: BSD 3 Clause

      • com.github.fommil.netlib:netlib-native_system-win-i686:jar:natives:1.1 (compile)

        netlib-native_system-win-i686
        Description: Mission-critical components for linear algebra systems. URL: https://github.com/fommil/netlib-java/native_system/netlib-native_system-win-i686 Project Licenses: BSD 3 Clause

  • net.sourceforge.f2j:arpack_combined_all:jar:0.1 (compile)

    Fortran to Java ARPACK
    Description: Java APIs for the BLAS, LAPACK, and ARPACK Fortran libraries as translated through F2J. URL: http://f2j.sourceforge.net Project Licenses: The BSD License

  • org.slf4j:slf4j-api:jar:2.0.3 (compile)

    SLF4J API Module
    Description: The slf4j API URL: http://www.slf4j.org Project Licenses: MIT License

  • org.apache.jena:jena-core:jar:2.7.4 (compile)

    jena-core
    Description: Jena is a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, SPARQL and includes a rule-based inference engine. URL: http://jena.apache.org/jena-core/ Project Licenses: The Apache Software License, Version 2.0

    • org.apache.jena:jena-iri:jar:0.9.4 (compile)

      jena-iri
      Description: There is currently no description associated with this project. URL: http://jena.apache.org/jena-iri/ Project Licenses: The Apache Software License, Version 2.0

    • xerces:xercesImpl:jar:2.10.0 (compile)

      Xerces2-j

      Description: Xerces2 is the next generation of high performance, fully compliant XML parsers in the Apache Xerces family. This new version of Xerces introduces the Xerces Native Interface (XNI), a complete framework for building parser components and configurations that is extremely modular and easy to program. The Apache Xerces2 parser is the reference implementation of XNI but other parser components, configurations, and parsers can be written using the Xerces Native Interface. For complete design and implementation documents, refer to the XNI Manual. Xerces2 is a fully conforming XML Schema 1.0 processor. A partial experimental implementation of the XML Schema 1.1 Structures and Datatypes Working Drafts (December 2009) and an experimental implementation of the XML Schema Definition Language (XSD): Component Designators (SCD) Candidate Recommendation (January 2010) are provided for evaluation. For more information, refer to the XML Schema page. Xerces2 also provides a complete implementation of the Document Object Model Level 3 Core and Load/Save W3C Recommendations and provides a complete implementation of the XML Inclusions (XInclude) W3C Recommendation. It also provides support for OASIS XML Catalogs v1.1. Xerces2 is able to parse documents written according to the XML 1.1 Recommendation, except that it does not yet provide an option to enable normalization checking as described in section 2.13 of this specification. It also handles namespaces according to the XML Namespaces 1.1 Recommendation, and will correctly serialize XML 1.1 documents if the DOM level 3 load/save APIs are in use. URL: https://xerces.apache.org/xerces2-j/ Project Licenses: The Apache Software License, Version 2.0

  • org.apache.jena:jena-larq:jar:1.0.0-incubating (compile)

    LARQ
    Description: LARQ extends ARQ with free text queries for SPARQL. Indexing and searching is done using Apache Lucene. URL: http://incubator.apache.org/jena/documentation/larq/ Project Licenses: The Apache Software License, Version 2.0

    • com.ibm.icu:icu4j:jar:3.4.4 (compile)

      ICU4J
      Description: The International Component for Unicode (ICU) is a mature, portable set of C/C++ and Java libraries for Unicode support, software internationalization (I18N) and globalization (G11N), giving applications the same results on all platforms. URL: http://www-306.ibm.com/software/globalization/icu/ Project Licenses: ICU License

  • org.apache.jena:jena-arq:jar:2.9.4 (compile)

    jena-arq
    Description: ARQ is a SPARQL 1.1 query engine for Jena URL: http://jena.apache.org/jena-arq/ Project Licenses: The Apache Software License, Version 2.0

    • org.slf4j:jcl-over-slf4j:jar:2.0.3 (compile)

      JCL 1.2 implemented over SLF4J
      Description: JCL 1.2 implemented over SLF4J URL: http://www.slf4j.org Project Licenses: Apache License, Version 2.0

  • org.apache.lucene:lucene-core:jar:3.6.2 (compile)

    Lucene Core
    Description: Apache Lucene Java Core URL: http://lucene.apache.org/java/lucene-parent/lucene-core Project Licenses: Apache 2

  • org.apache.lucene:lucene-analyzers:jar:3.6.2 (compile)

    Lucene Common Analyzers
    Description: Additional Analyzers URL: http://lucene.apache.org/java/lucene-parent/lucene-analyzers Project Licenses: Apache 2

  • org.jfree:jfreechart:jar:1.5.3 (compile)

    JFreeChart
    Description: JFreeChart is a class library, written in Java, for generating charts. Utilising the Java2D API, it supports a wide range of chart types including bar charts, pie charts, line charts, XY-plots, time series plots, Sankey charts and more. URL: http://www.jfree.org/jfreechart/ Project Licenses: GNU Lesser General Public Licence

  • xml-apis:xml-apis:jar:1.4.01 (compile)

    XML Commons External Components XML APIs

    Description: xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun. URL: http://xml.apache.org/commons/components/external/ Project Licenses: The Apache Software License, Version 2.0, The SAX License, The W3C License

  • com.opencsv:opencsv:jar:5.7.1 (compile)

    opencsv
    Description: A simple library for reading and writing CSV in Java URL: http://opencsv.sf.net Project Licenses: Apache 2

    • commons-beanutils:commons-beanutils:jar:1.9.4 (compile)

      Apache Commons BeanUtils
      Description: Apache Commons BeanUtils provides an easy-to-use but flexible wrapper around reflection and introspection. URL: https://commons.apache.org/proper/commons-beanutils/ Project Licenses: Apache License, Version 2.0

      • commons-collections:commons-collections:jar:3.2.2 (compile)

        Apache Commons Collections
        Description: Types that extend and augment the Java Collections Framework. URL: http://commons.apache.org/collections/ Project Licenses: Apache License, Version 2.0

  • junit:junit:jar:4.13.2 (test)

    JUnit
    Description: JUnit is a unit testing framework for Java, created by Erich Gamma and Kent Beck. URL: http://junit.org Project Licenses: Eclipse Public License 1.0

    • org.hamcrest:hamcrest-core:jar:1.3 (test)

      Hamcrest Core
      Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project Licenses: New BSD License

  • org.mockito:mockito-core:jar:4.8.1 (test)

    mockito-core
    Description: Mockito mock objects library core API and implementation URL: https://github.com/mockito/mockito Project Licenses: The MIT License

    • net.bytebuddy:byte-buddy:jar:1.12.16 (test)

      Byte Buddy (without dependencies)
      Description: Byte Buddy is a Java library for creating Java classes at run time. This artifact is a build of Byte Buddy with all ASM dependencies repackaged into its own name space. URL: https://bytebuddy.net/byte-buddy Project Licenses: Apache License, Version 2.0

    • net.bytebuddy:byte-buddy-agent:jar:1.12.16 (test)

      Byte Buddy agent
      Description: The Byte Buddy agent offers convenience for attaching an agent to the local or a remote VM. URL: https://bytebuddy.net/byte-buddy-agent Project Licenses: Apache License, Version 2.0

    • org.objenesis:objenesis:jar:3.2 (test)

      Objenesis
      Description: A library for instantiating Java objects URL: http://objenesis.org/objenesis Project Licenses: Apache License, Version 2.0

  • org.apache.logging.log4j:log4j-core:jar:2.19.0 (runtime)

    Apache Log4j Core
    Description: The Apache Log4j Implementation URL: https://logging.apache.org/log4j/2.x/log4j-core/ Project Licenses: Apache License, Version 2.0

  • org.apache.logging.log4j:log4j-slf4j-impl:jar:2.19.0 (runtime)

    Apache Log4j SLF4J Binding
    Description: The Apache Log4j SLF4J API binding to Log4j 2 Core URL: https://logging.apache.org/log4j/2.x/log4j-slf4j-impl/ Project Licenses: Apache License, Version 2.0