Package ubic.basecode.ontology.jena

Class UrlOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.jena.UrlOntologyService

All Implemented Interfaces:

AutoCloseable, OntologyService

public class UrlOntologyService
extends AbstractOntologyService

An ontology service that loads an ontology from a URL.

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
UrlOntologyService(String ontologyName, String ontologyUrl, boolean ontologyEnabled, String cacheName)

Method Summary

Modifier and Type	Method	Description
protected OntologyModel	loadModel(boolean processImports, OntologyService.LanguageLevel languageLevel, OntologyService.InferenceMode inferenceMode)	Delegates the call as to load the model into memory or leave it on disk.
protected OntologyModel	loadModelFromStream(InputStream is, boolean processImports, OntologyService.LanguageLevel languageLevel, OntologyService.InferenceMode inferenceMode)	Load a model from a given input stream.

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, close, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getCacheName, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getOntologyName, getOntologyUrl, getParents, getProcessImports, getResource, getSpec, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyEnabled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

UrlOntologyService

public UrlOntologyService(String ontologyName,
                          String ontologyUrl,
                          boolean ontologyEnabled,
                          @Nullable
                          String cacheName)

Method Detail

loadModel

protected OntologyModel loadModel(boolean processImports,
                                  OntologyService.LanguageLevel languageLevel,
                                  OntologyService.InferenceMode inferenceMode)
                           throws IOException

Description copied from class: AbstractOntologyService

Delegates the call as to load the model into memory or leave it on disk. Simply delegates to either OntologyLoader.loadMemoryModel( url ); OR OntologyLoader.loadPersistentModel( url, spec );

Specified by:

loadModel in class AbstractOntologyService

Throws:

IOException

loadModelFromStream

protected OntologyModel loadModelFromStream(InputStream is,
                                            boolean processImports,
                                            OntologyService.LanguageLevel languageLevel,
                                            OntologyService.InferenceMode inferenceMode)
                                     throws IOException

Description copied from class: AbstractOntologyService

Load a model from a given input stream.

Specified by:

loadModelFromStream in class AbstractOntologyService

Throws:

IOException