ubic.basecode.ontology.providers (baseCode 1.1.24-SNAPSHOT API)

This package contains baseCode built-in ontologies and a GenericOntologyService to implement your own ontologies.

Interface Summary
Interface	Description
OntologyService

Class Summary
Class	Description
AbstractBaseCodeOntologyService	Base class for all ontologies built-in to the baseCode project.
AbstractOntologyService	Base class for all ontology services.
CellLineOntologyService	Cell Line Ontology
CellTypeOntologyService	Cell Ontology
ChebiOntologyService	Chemical Entities of Biological Interest
DiseaseOntologyService	Deprecated. use MONDO instead
ExperimentalFactorOntologyService	Experimental Factor Ontology
FMAOntologyService	Deprecated. this ontology is inactive, use UBERON instead
GenericOntologyService	A way to create ad-hoc in-memory ontology services.
HumanDevelopmentOntologyService	Deprecated. this ontology was last updated in unmaintained since 2013
HumanPhenotypeOntologyService	Human Phenotype Ontology
MammalianPhenotypeOntologyService	Mammalian Phenotype Ontology
MedicOntologyService	Deprecated.
MouseDevelopmentOntologyService	Mouse Developmental Anatomy Ontology
NIFSTDOntologyService	Deprecated.
ObiService	Ontology for Biomedical Investigations
SequenceOntologyService	Sequence types and features ontology
UberonOntologyService	Uberon multi-species anatomy ontology
UnitsOntologyService	Units of measurement ontology

Package ubic.basecode.ontology.providers