All Classes

Class Summary

Class	Description
AbstractDoubleMatrixTest	TODO Document Me
AbstractOntologyTest	Base class for ontology-based tests.
AbstractRClientTest
AbstractTestFilter	Fixture for testing filtering of matrices.
AnnotatorClientTest
BatchIteratorTest
BinaryTreeTest
BitUtilTest
CompressedNamedBitMatrixTest
CompressedSparseDoubleMatrixTest	T
ConfigUtilsTest
CorrelationStatsTest	Most benchmarks come from R, using things like cor.test(rnorm(50), rnorm(50), method="spearman", alternative="two.sided"),
CountingMapTest
DateUtilTest
DenseDouble3dMatrixTest
DenseDoubleMatrixTest
DesignMatrixTest
DiseaseOntologyServiceTest
DistanceTest
DoubleAddingMapTest
ExcelUtilTest
FastRowAccessDoubleMatrixTest
FileToolsTest
GenericOntologyServiceTest
HistogramReaderTest
HistogramSamplerTest
HistogramTest
IntegerMatrixTest
JenaUtilsTest
JRIClientTest
KruskalWallisTest
LeastSquaresFitTest
LeastSquaresFitTest2
MatrixDisplayTest
MatrixUtilTest
MatrixWriterTest
MeanVarianceEstimatorTest
MedicOntologyServiceTest
MetaAnalysisTest
ModeratedTstatTest	TODO Document Me
MultipleTestCorrectionTest
NetUtilsTest
NIFSTDOntologyServiceTest
NormalProbabilityComputerTest
ObiServiceTest
OntologyLoaderTest	Test loading a database-backed ontology
OntologyProvidersTest	Test initialization of all providers not already covered by a specific test.
OntologySearchTest	Most of these tests were moved over from Gemma.
OntologyTermTest
ParameterKeeperTest
ParamGrabberTest
PrecisionRecallTest
PrettyPrinterTest
PrettyPrinterTest.OntologyTermSimple
QRDecompositionTest
RandomChooserTest
RCDoubleMatrix1DTest
RCDoubleMatrix1DTest2
RServeClientTest
SingularValueDecompositionTest
SparseDoubleMatrixTest
SparseRaggedDoubleMatrixTest
SQLUtilsTest
StringDistanceTest
StringMatrixTest
StringToStringSetMapTest
StringUtilTest
TestByteArrayConverter
TestCorrelationEffectMetaAnalysis	Tests based on Cooper and Hedges.
TestDescriptiveWithMissing
TestDirectedGraph
TestDoubleMatrixReader
TestHistogramWriter
TestItemLevelFilter
TestKSTest
TestMapReader
TestMathUtil
TestMatrixNormalizer
TestMatrixRowStats
TestMatrixStats
TestMeanDifferenceMetaAnalysis
TestRank
TestROC
TestRowAbsentFilter	See the file test/data/matrix-testing.xls for the validation.
TestRowAffyNameFilter
TestRowLevelFilter
TestRowMissingFilter	See the file test/data/matrix-testing.xls for the validation.
TestRowNameFilter
TestSparseDoubleMatrixReader
TestSparseRaggedDouble2DNamedMatrixReader
TestSpecFunc
TestStats
TestStringConverter	$Id$
TestStringMatrixReader
TestStringUtil
TestWilcoxon	Gold standard (?) is the exactRankTests (http://cran.r-project.org/src/contrib/Descriptions/exactRankTests.html) or on Catmap.
TestWishart
UberonOntologySearchTest
UberonOntologyServiceTest
UniformDensityComputerTest