Package ubic.basecode.math.linearmodels

Class GenericAnovaResult

java.lang.Object

ubic.basecode.util.r.type.AnovaResult

ubic.basecode.math.linearmodels.GenericAnovaResult

All Implemented Interfaces:

Serializable

public class GenericAnovaResult
extends AnovaResult
implements Serializable

A generic representation of an R-style ANOVA table, including interactions.

Author:

paul

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.basecode.util.r.type.AnovaResult

residualDf

Constructor Summary

Constructors

Constructor	Description
GenericAnovaResult(Collection<AnovaEffect> effects)
GenericAnovaResult(org.rosuda.REngine.REXP rAnovaTable)

Method Summary

Modifier and Type	Method	Description
Double	getInteractionEffectF()
Double	getInteractionEffectP()
Double	getInteractionEffectP(String... factorNames)
Double	getMainEffectDof(String factorName)
Double	getMainEffectF(String factorName)
Collection<String>	getMainEffectFactorNames()
Double	getMainEffectP(String factorName)
boolean	hasInteractions()
String	toString()

Methods inherited from class ubic.basecode.util.r.type.AnovaResult

equals, getKey, getResidualDf, hashCode, setKey

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

GenericAnovaResult

public GenericAnovaResult(Collection<AnovaEffect> effects)

Parameters:

effects -

GenericAnovaResult

public GenericAnovaResult(org.rosuda.REngine.REXP rAnovaTable)

Parameters:

rAnovaTable - from R call to 'anova(...)'

Method Detail

getInteractionEffectF

public Double getInteractionEffectF()

getInteractionEffectP

public Double getInteractionEffectP()

getInteractionEffectP

public Double getInteractionEffectP(String... factorNames)

Parameters:

factorNames - e.g. f,g

Returns:

getMainEffectDof

public Double getMainEffectDof(String factorName)

getMainEffectF

public Double getMainEffectF(String factorName)

getMainEffectFactorNames

public Collection<String> getMainEffectFactorNames()

Returns:

names of main effects factors like 'f', 'g'.

getMainEffectP

public Double getMainEffectP(String factorName)

hasInteractions

public boolean hasInteractions()

toString

public String toString()

Overrides:

toString in class Object