Constant Field Values

Contents

• ubic.basecode.*

ubic.basecode.*

ubic.basecode.datafilter.AffymetrixProbeNameFilter<M extends Matrix2D<R,C,V>,R,C,V>

Modifier and Type	Constant Field	Value
public static final int	AFFX	2
public static final int	F	3
public static final int	G	5
public static final int	ST	1
public static final int	X	4

ubic.basecode.datafilter.RowLevelFilter<R,C>

Modifier and Type	Constant Field	Value
public static final int	CV	6
public static final int	MAX	2
public static final int	MEAN	4
public static final int	MEDIAN	3
public static final int	MIN	1
public static final int	RANGE	5

ubic.basecode.dataStructure.matrix.AbstractMatrix<R,C,V>

Modifier and Type	Constant Field	Value
protected static final int	MAX_ROWS_TO_PRINT	100

ubic.basecode.dataStructure.matrix.DoubleMatrix3D<R,C,S>

Modifier and Type	Constant Field	Value
protected static final int	MAX_ROWS_TO_PRINT	20
protected static final int	MAX_SLICES_TO_PRINT	10

ubic.basecode.graphics.ColorMap

Modifier and Type	Constant Field	Value
public static final int	m_defaultSuggestedNumberOfColors	32

ubic.basecode.graphics.MatrixDisplay<R,C>

Modifier and Type	Constant Field	Value
protected final int	m_defaultResolution	120
protected final int	m_maxFontSize	10

ubic.basecode.io.writer.MatrixWriter<R,C>

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_SEP	"\t"
public static final String	DEFAULT_TOP_LEFT	"ID"

ubic.basecode.math.Constants

Modifier and Type	Constant Field	Value
public static final double	M_1_PI	0.3183098861837907
public static final double	M_1_SQRT_2	0.7071067811865476
public static final double	M_1_SQRT_2PI	0.3989422804014327
public static final double	M_LN_2	0.6931471805599453
public static final double	M_LN_SQRT_2PI	0.9189385332046728
public static final double	M_LN_SQRT_PI	0.5723649429247001
public static final double	M_LN_SQRT_PId2	0.22579135264472744
public static final double	M_LOG10_2	0.3010299956639812
public static final double	M_PI_2	1.5707963267948966
public static final double	M_PI_4	0.7853981633974483
public static final double	M_PI_half	1.5707963267948966
public static final double	M_SQRT_2	1.4142135623730951
public static final double	M_SQRT_2dPI	0.7978845608028654
public static final double	M_SQRT_PI	1.772453850905516
public static final double	SMALL	1.0E-10
public static final double	SMALLISH	1.0E-5
public static final double	TINY	1.0E-20

ubic.basecode.math.linearmodels.LinearModelSummary

Modifier and Type	Constant Field	Value
public static final String	INTERCEPT_COEFFICIENT_NAME	"(Intercept)"

ubic.basecode.ontology.ncbo.AnnotatorClient

Modifier and Type	Constant Field	Value
public static final String	DOID_ONTOLOGY	"DOID"
public static final String	HP_ONTOLOGY	"HP"

ubic.basecode.util.FileTools

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_DATA_EXTENSION	".txt"
public static final String	DEFAULT_IMAGE_EXTENSION	".png"
public static final String	DEFAULT_XML_EXTENSION	".xml"
protected static final String	GIF_EXTENSION	".gif"