AbstractOntologyMemoryBackedService (baseCode 1.1.16 API)

java.lang.Object
- ubic.basecode.ontology.jena.AbstractOntologyService
- - ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService

All Implemented Interfaces:

OntologyService

Direct Known Subclasses:

CellLineOntologyService, CellTypeOntologyService, ChebiOntologyService, DiseaseOntologyService, ExperimentalFactorOntologyService, FMAOntologyService, GenericOntologyService, HumanDevelopmentOntologyService, HumanPhenotypeOntologyService, MammalianPhenotypeOntologyService, MouseDevelopmentOntologyService, NIFSTDOntologyService, ObiService, SequenceOntologyService, UberonOntologyService, UnitsOntologyService
```
public abstract class AbstractOntologyMemoryBackedService
extends AbstractOntologyService
```
This class has some stuff that's specific to in-memory ontologies. Unlike database backed ontologies we don't use a pool keeping only one instance of model in memory.

Author:

paul

Field Summary
- Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
  log

Constructor Summary

Constructors
Constructor Description

AbstractOntologyMemoryBackedService()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected boolean`	`getProcessImport()`
`protected com.hp.hpl.jena.ontology.OntModel`	`loadModel()`	Delegates the call as to load the model into memory or leave it on disk.
`protected com.hp.hpl.jena.ontology.OntModel`	`loadModelFromStream(InputStream is)`	Load a model from a given input stream.

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
cancelInitializationThread, closeIndex, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAllURIs, getCacheName, getChildren, getOntologyName, getOntologyUrl, getParents, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, loadTermsInNameSpace, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService
findIndividuals, findResources, findTerm, getChildren, getParents

- Constructor Detail
  - AbstractOntologyMemoryBackedService
```
public AbstractOntologyMemoryBackedService()
```
- Method Detail
  - getProcessImport
```
protected boolean getProcessImport()
```
  - loadModel
```
protected com.hp.hpl.jena.ontology.OntModel loadModel()
```
    Description copied from class: AbstractOntologyService
    
    Delegates the call as to load the model into memory or leave it on disk. Simply delegates to either OntologyLoader.loadMemoryModel( url ); OR OntologyLoader.loadPersistentModel( url, spec );
    
    Specified by:
    
    loadModel in class AbstractOntologyService
  - loadModelFromStream
```
protected com.hp.hpl.jena.ontology.OntModel loadModelFromStream(InputStream is)
```
    Description copied from class: AbstractOntologyService
    
    Load a model from a given input stream.
    
    Specified by:
    
    loadModelFromStream in class AbstractOntologyService