Package ubic.basecode.ontology.search

Class OntologySearchTest

java.lang.Object

ubic.basecode.ontology.AbstractOntologyTest

ubic.basecode.ontology.search.OntologySearchTest

public class OntologySearchTest
extends AbstractOntologyTest

Most of these tests were moved over from Gemma.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
OntologySearchTest()

Method Summary

Modifier and Type	Method	Description
void	matchClasses_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()
void	matchIndividuals_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()
void	matchResources_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()
static void	setUpUberon()
void	testIndexing()
void	testOmitBadPredicates()	See bug 2920
void	testOmitBadPredicates2()	See bug 3269
void	testOmitDefinition()
void	testOmitDefinitions()
void	testOmitDefinitions2()
void	testOmitDefinitions3()
void	testOmitDefinitions4()
void	testPersistence()
void	testScore()

Methods inherited from class ubic.basecode.ontology.AbstractOntologyTest

clearOntologyCacheDir, setUpOntologyCacheDir

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologySearchTest

public OntologySearchTest()

Method Detail

setUpUberon

public static void setUpUberon()
                        throws IOException

Throws:

IOException

testIndexing

public final void testIndexing()
                        throws Exception

Throws:

Exception

testOmitBadPredicates

public final void testOmitBadPredicates()
                                 throws Exception

See bug 2920

Throws:

Exception

testOmitBadPredicates2

public final void testOmitBadPredicates2()
                                  throws Exception

See bug 3269

Throws:

Exception

testOmitDefinitions

public final void testOmitDefinitions()
                               throws Exception

Throws:

Exception

testOmitDefinitions2

public final void testOmitDefinitions2()
                                throws Exception

Throws:

Exception

testOmitDefinitions3

public final void testOmitDefinitions3()
                                throws Exception

Throws:

Exception

testOmitDefinitions4

public final void testOmitDefinitions4()
                                throws Exception

Throws:

Exception

testOmitDefinition

public void testOmitDefinition()
                        throws OntologySearchException

Throws:

OntologySearchException

testScore

public void testScore()
               throws OntologySearchException

Throws:

OntologySearchException

testPersistence

public final void testPersistence()
                           throws Exception

Throws:

Exception

matchClasses_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException

public final void matchClasses_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()

matchIndividuals_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException

public final void matchIndividuals_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()

matchResources_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException

public final void matchResources_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException()