Package ubic.basecode.ontology

Class OntologyTermTest

java.lang.Object

ubic.basecode.ontology.AbstractOntologyTest

ubic.basecode.ontology.OntologyTermTest

public class OntologyTermTest
extends AbstractOntologyTest

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
OntologyTermTest()

Method Summary

Modifier and Type	Method	Description
static void	initializeUberon()
void	testFindTerm()
void	testGetChildren()
void	testGetChildrenFromMultipleTerms()
void	testGetChildrenFromMultipleTermsWithSearch()
void	testGetChildrenHasPart()
void	testGetChildrenHasProperPart()	FIXME this uses NIF, which we are no longer using actively - not a big deal since this just tests mechanics
void	testGetParents()
void	testGetParentsFromMultipleTerms()
void	testGetParentsHasPart()
void	testGetParentsHasProperPart()
void	testRejectNonEnglish()
void	testUberon()

Methods inherited from class ubic.basecode.ontology.AbstractOntologyTest

clearOntologyCacheDir, setUpOntologyCacheDir

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyTermTest

public OntologyTermTest()

Method Detail

initializeUberon

public static void initializeUberon()
                             throws IOException

Throws:

IOException

testGetChildren

public void testGetChildren()
                     throws Exception

Throws:

Exception

testGetChildrenHasProperPart

public void testGetChildrenHasProperPart()
                                  throws Exception

FIXME this uses NIF, which we are no longer using actively - not a big deal since this just tests mechanics

Throws:

Exception

testGetParents

public void testGetParents()
                    throws Exception

Throws:

Exception

testUberon

public void testUberon()

testGetParentsFromMultipleTerms

public void testGetParentsFromMultipleTerms()

testGetParentsHasProperPart

public void testGetParentsHasProperPart()
                                 throws Exception

Throws:

Exception

testRejectNonEnglish

public void testRejectNonEnglish()
                          throws Exception

Throws:

Exception

testGetParentsHasPart

public void testGetParentsHasPart()

testGetChildrenHasPart

public void testGetChildrenHasPart()

testGetChildrenFromMultipleTerms

public void testGetChildrenFromMultipleTerms()

testGetChildrenFromMultipleTermsWithSearch

public void testGetChildrenFromMultipleTermsWithSearch()
                                                throws OntologySearchException

Throws:

OntologySearchException

testFindTerm

public void testFindTerm()
                  throws OntologySearchException

Throws:

OntologySearchException