Package ubic.basecode.math

Class TestMatrixStats

java.lang.Object

ubic.basecode.math.TestMatrixStats

public class TestMatrixStats
extends Object

Author:

pavlidis

Constructor Summary

Constructors

Constructor	Description
TestMatrixStats()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testColSumsWithMissing()
void	testConvertLog()
void	testConvertToLog2Cpm()
void	testCorrelationMatrix()
void	testCorrelationMatrixThreshold()
void	testCountsPerMillionWithMissing()
void	testCov2Cor()
void	testDoubleStandardize()
void	testLogTransform()
void	testMax()
void	testMin()
void	testNan()
void	testRbfNormalize()
void	testSelfSquare()
void	testStandardize()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TestMatrixStats

public TestMatrixStats()

Method Detail

setUp

public void setUp()
           throws Exception

Throws:

Exception

testColSumsWithMissing

public void testColSumsWithMissing()
                            throws Exception

Throws:

Exception

testConvertLog

public final void testConvertLog()

testConvertToLog2Cpm

public final void testConvertToLog2Cpm()

testCorrelationMatrix

public final void testCorrelationMatrix()
                                 throws Exception

Throws:

Exception

testCorrelationMatrixThreshold

public final void testCorrelationMatrixThreshold()
                                          throws Exception

Throws:

Exception

testCountsPerMillionWithMissing

public void testCountsPerMillionWithMissing()
                                     throws Exception

Throws:

Exception

testDoubleStandardize

public final void testDoubleStandardize()

testLogTransform

public final void testLogTransform()

testMax

public final void testMax()

testMin

public final void testMin()

testNan

public final void testNan()

testRbfNormalize

public final void testRbfNormalize()

testSelfSquare

public final void testSelfSquare()

testStandardize

public final void testStandardize()

testCov2Cor

public final void testCov2Cor()
                       throws Exception

Throws:

Exception