[Summary] [Package List] [Test Cases]
| Tests | Errors | Failures | Skipped | Success Rate | Time |
|---|---|---|---|---|---|
| 740 | 2 | 1 | 3 | 99.189% | 75.804 |
Note: failures are anticipated and checked for with assertions while errors are unanticipated.
[Summary] [Package List] [Test Cases]
Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestByteArrayConverter | 15 | 0 | 0 | 0 | 100% | 0.049 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| QRDecompositionTest | 5 | 0 | 0 | 0 | 100% | 0.015 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| ConfigUtilsTest | 13 | 0 | 0 | 0 | 100% | 0.106 | |
| FileToolsTest | 32 | 0 | 0 | 0 | 100% | 0.036 | |
| PrettyPrinterTest | 1 | 0 | 0 | 0 | 100% | 0.001 | |
| SQLUtilsTest | 1 | 0 | 0 | 0 | 100% | 0 | |
| TestStringUtil | 8 | 0 | 0 | 0 | 100% | 0.006 | |
| BatchIteratorTest | 3 | 0 | 0 | 0 | 100% | 0.001 | |
| StringUtilTest | 5 | 0 | 0 | 0 | 100% | 0 | |
| NetUtilsTest | 4 | 0 | 0 | 0 | 100% | 5.344 | |
| DateUtilTest | 6 | 0 | 0 | 0 | 100% | 0.011 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| ParamGrabberTest | 1 | 0 | 0 | 0 | 100% | 0 | |
| ParameterKeeperTest | 1 | 0 | 0 | 0 | 100% | 0.111 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| MatrixDisplayTest | 4 | 0 | 0 | 0 | 100% | 0.369 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| OntologySearchTest | 13 | 2 | 0 | 0 | 84.615% | 39.913 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestHistogramWriter | 1 | 0 | 0 | 0 | 100% | 0.002 | |
| MatrixWriterTest | 3 | 0 | 0 | 0 | 100% | 0.005 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| AnnotatorClientTest | 3 | 0 | 0 | 3 | 0% | 0.002 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| UniformDensityComputerTest | 1 | 0 | 0 | 0 | 100% | 0 | |
| TestWishart | 1 | 0 | 0 | 0 | 100% | 0.002 | |
| HistogramSamplerTest | 1 | 0 | 0 | 0 | 100% | 0.016 | |
| NormalProbabilityComputerTest | 4 | 0 | 0 | 0 | 100% | 0.001 | |
| HistogramTest | 2 | 0 | 0 | 0 | 100% | 0.001 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| ObiServiceTest | 2 | 0 | 1 | 0 | 50% | 8.176 | |
| AbstractOntologyServiceTest | 3 | 0 | 0 | 0 | 100% | 1.994 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| JRIClientTest | 21 | 0 | 0 | 0 | 100% | 0.002 | |
| RServeClientTest | 21 | 0 | 0 | 0 | 100% | 7.137 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| MeanVarianceEstimatorTest | 5 | 0 | 0 | 0 | 100% | 0.045 | |
| LeastSquaresFitTest | 20 | 0 | 0 | 0 | 100% | 5.658 | |
| ModeratedTstatTest | 6 | 0 | 0 | 0 | 100% | 0.131 | |
| DesignMatrixTest | 5 | 0 | 0 | 0 | 100% | 0.005 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestCorrelationEffectMetaAnalysis | 9 | 0 | 0 | 0 | 100% | 0.002 | |
| MetaAnalysisTest | 2 | 0 | 0 | 0 | 100% | 0.001 | |
| TestMeanDifferenceMetaAnalysis | 8 | 0 | 0 | 0 | 100% | 0 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| OntologyLoaderTest | 2 | 0 | 0 | 0 | 100% | 0.055 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestDirectedGraph | 11 | 0 | 0 | 0 | 100% | 0.246 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| CompressedSparseDoubleMatrixTest | 38 | 0 | 0 | 0 | 100% | 0.108 | |
| DenseDoubleMatrixTest | 39 | 0 | 0 | 0 | 100% | 0.061 | |
| CompressedNamedBitMatrixTest | 9 | 0 | 0 | 0 | 100% | 0.003 | |
| FastRowAccessDoubleMatrixTest | 39 | 0 | 0 | 0 | 100% | 0.042 | |
| DenseDouble3dMatrixTest | 4 | 0 | 0 | 0 | 100% | 0.003 | |
| StringMatrixTest | 4 | 0 | 0 | 0 | 100% | 0.004 | |
| MatrixUtilTest | 7 | 0 | 0 | 0 | 100% | 0.023 | |
| SparseRaggedDoubleMatrixTest | 10 | 0 | 0 | 0 | 100% | 0.016 | |
| RCDoubleMatrix1DTest | 3 | 0 | 0 | 0 | 100% | 0 | |
| SparseDoubleMatrixTest | 24 | 0 | 0 | 0 | 100% | 0.011 | |
| IntegerMatrixTest | 16 | 0 | 0 | 0 | 100% | 0.006 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestSpecFunc | 7 | 0 | 0 | 0 | 100% | 0.001 | |
| TestDescriptiveWithMissing | 44 | 0 | 0 | 0 | 100% | 0.002 | |
| TestRank | 14 | 0 | 0 | 0 | 100% | 0.003 | |
| RandomChooserTest | 7 | 0 | 0 | 0 | 100% | 0.497 | |
| TestMatrixStats | 15 | 0 | 0 | 0 | 100% | 0.02 | |
| StringDistanceTest | 16 | 0 | 0 | 0 | 100% | 0.003 | |
| TestKSTest | 2 | 0 | 0 | 0 | 100% | 0 | |
| TestROC | 3 | 0 | 0 | 0 | 100% | 0.03 | |
| TestWilcoxon | 15 | 0 | 0 | 0 | 100% | 3.256 | |
| TestMatrixNormalizer | 2 | 0 | 0 | 0 | 100% | 0.001 | |
| TestStats | 14 | 0 | 0 | 0 | 100% | 0 | |
| TestMathUtil | 5 | 0 | 0 | 0 | 100% | 0 | |
| KruskalWallisTest | 1 | 0 | 0 | 0 | 100% | 0.001 | |
| TestMatrixRowStats | 6 | 0 | 0 | 0 | 100% | 0.001 | |
| SingularValueDecompositionTest | 1 | 0 | 0 | 0 | 100% | 0.102 | |
| CorrelationStatsTest | 18 | 0 | 0 | 0 | 100% | 0.059 | |
| PrecisionRecallTest | 5 | 0 | 0 | 0 | 100% | 0 | |
| MultipleTestCorrectionTest | 5 | 0 | 0 | 0 | 100% | 0.048 | |
| DistanceTest | 12 | 0 | 0 | 0 | 100% | 0 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestSparseRaggedDouble2DNamedMatrixReader | 3 | 0 | 0 | 0 | 100% | 0.577 | |
| TestDoubleMatrixReader | 15 | 0 | 0 | 0 | 100% | 0.042 | |
| TestSparseDoubleMatrixReader | 2 | 0 | 0 | 0 | 100% | 0.005 | |
| TestMapReader | 3 | 0 | 0 | 0 | 100% | 0 | |
| TestStringMatrixReader | 4 | 0 | 0 | 0 | 100% | 0.001 | |
| HistogramReaderTest | 2 | 0 | 0 | 0 | 100% | 0.003 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| TestRowNameFilter | 4 | 0 | 0 | 0 | 100% | 0.012 | |
| TestRowAffyNameFilter | 2 | 0 | 0 | 0 | 100% | 0.005 | |
| TestRowAbsentFilter | 9 | 0 | 0 | 0 | 100% | 0.016 | |
| TestRowMissingFilter | 11 | 0 | 0 | 0 | 100% | 0.012 | |
| TestRowLevelFilter | 23 | 0 | 0 | 0 | 100% | 0.074 | |
| TestItemLevelFilter | 1 | 0 | 0 | 0 | 100% | 0 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| OntologyTermTest | 5 | 0 | 0 | 0 | 100% | 1.173 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| BinaryTreeTest | 7 | 0 | 0 | 0 | 100% | 0 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| StringToStringSetMapTest | 6 | 0 | 0 | 0 | 100% | 0.001 | |
| DoubleAddingMapTest | 1 | 0 | 0 | 0 | 100% | 0 | |
| CountingMapTest | 6 | 0 | 0 | 0 | 100% | 0.001 | |
| BitUtilTest | 5 | 0 | 0 | 0 | 100% | 0 |
| Class | Tests | Errors | Failures | Skipped | Success Rate | Time | |
|---|---|---|---|---|---|---|---|
| ExcelUtilTest | 3 | 0 | 0 | 0 | 100% | 0.138 |
[Summary] [Package List] [Test Cases]
| testPrintBeans | 0 |
| testBlobToString | 0 |
| testTwoStringHashKey | 0 | |
| testCsvSplitA | 0.004 | |
| testCsvSplitB | 0 | |
| testCsvSplitC | 0 | |
| testCsvSplitD | 0.001 | |
| testCsvSplitE | 0 | |
| testCsvSplitF | 0 | |
| testTwoStringHashKeyB | 0 |
| testBatches | 0 | |
| testBatchIterator | 0 | |
| testConcurrentModificationException | 0 |
| testMakeRnames | 0 | |
| testCommonPrefixNone | 0 | |
| testCommonSuffixNone | 0 | |
| testCommonPrefix | 0 | |
| testCommonSuffix | 0 |
| testFtpFileSize | 1.469 | |
| testCheckForFile | 0.906 | |
| testFtpFileSizeDoesntExist | 1.729 | |
| testDownloadFile | 1.24 |
| testgetRelative5yearsFromnow | 0.004 | |
| testRange | 0.002 | |
| testgetRelative5yearsago | 0 | |
| testgetRelativeTomorrow | 0.001 | |
| testgetRelativeDateDayago | 0 | |
| testRangeBad | 0.001 |
| testGetOutOfBounds | 0.001 | |
| testOverlap | 0 | |
| testGet | 0 | |
| testTotalBitCount | 0 | |
| testOutOfBounds | 0 | |
| testOutOfBounds2 | 0 | |
| testGetRowBitCount | 0 | |
| testBitMatrix | 0 | |
| testBitCount | 0.001 |
| testget | 0.002 | |
| testtostring | 0.001 | |
| testgetcolobj | 0 | |
| testgetrowobj | 0 |
| testToString | 0.001 | |
| testSubsetColumns | 0.001 | |
| testGetColObj | 0.001 | |
| testSubset | 0.001 |
| testSelectColumnsAndRowsBad | 0.003 | |
| testSelectColumns | 0.002 | |
| testDropColumn | 0.002 | |
| testSelectColumnsAndRows | 0.01 | |
| testRemoveMissing1 | 0.002 | |
| testRemoveMissing2 | 0.002 | |
| testSelectRows | 0.002 |
| testSubsetRows | 0.011 | |
| testSubsetRowsFail | 0 | |
| testRows | 0.001 | |
| testGetRowMatrix1D | 0.001 | |
| testGetRowArrayList | 0 | |
| testColumns | 0.001 | |
| testGetColRange | 0 | |
| testAddrow | 0.001 | |
| testGetRow | 0 | |
| testGetRowRange | 0 |
| testZSum | 0 | |
| testAssignAr | 0 | |
| testAssign | 0 |
| test | 0 |
| test | 0.111 |
| testGetRight | 0 | |
| testInsertRight | 0 | |
| testGetLeft | 0 | |
| testGetRoot | 0 | |
| testInsertLeft | 0 | |
| testIsLeaf | 0 | |
| testIsEmpty | 0 |
| testExpandedValues | 0 | |
| testMatrix2 | 0.001 | |
| testExpandedSize | 0 | |
| testWhereIs | 0 | |
| testMatrix | 0 | |
| testSeenValues | 0 |
| test | 0 |
| testSummation | 0 | |
| testCount | 0 | |
| testSeen | 0 | |
| testIncrement | 0 | |
| testSortedKeyList | 0.001 | |
| testSortedKeyListBoolean | 0 |
| testGet | 0 | |
| testSet | 0 | |
| testClear | 0 | |
| testCount | 0 | |
| testToBool | 0 |
| testFilterString | 0.002 | |
| testFilterExclude | 0.004 | |
| testFilter | 0.003 | |
| testFilterStringExclude | 0.003 |
| testStringFilter | 0.002 | |
| testFilter | 0.003 |
| testFilter | 0 |
| testWriteOutAsPNG2 | 0.348 | |
| testWriteOutAsPNG | 0.006 | |
| testSaveImage | 0.004 | |
| testSaveImageStandardize | 0.011 |
| testGetSheetFromFile | 0.136 | |
| testGetSet | 0 | |
| testSetFormula | 0.002 |
| testReadStreamAdjList | 0.001 | |
| testReadInputStream | 0.001 | |
| testReadStreamAdjListBig | 0.575 |
| testReadStream | 0 | |
| testReadJW | 0.005 |
| testRead | 0 | |
| testReadNoHeader | 0 | |
| testReadNoHeaderFile | 0 |
| testReadInputStreamRowCount | 0 | |
| testReadInputStreamGotColName | 0.001 | |
| testReadInputStreamGotRowName | 0 | |
| testReadInputStreamColumnCount | 0 |
| testHistogramReaderIs | 0.003 | |
| testHistogramReaderString | 0 |
| testWriter | 0.002 |
| testWriteMatrixB | 0.003 | |
| testWriteMatrix | 0.001 | |
| testWrite3DMatrix | 0.001 |
| testDensity | 0 |
| testNextDoubleMatrix | 0.002 |
| testNextSample | 0.016 |
| testProbabilityDoubleBoolean | 0.001 | |
| testProbabilityDoubleBooleanLower | 0 | |
| testInvalidVariance | 0 | |
| testProbabilityDouble | 0 |
| testGetBiggestBinSize | 0.001 | |
| testGetApproximateQuantile | 0 |
| testScaledDesign | 0.006 | |
| testSingular2 | 0.002 | |
| test1 | 0.004 | |
| test3 | 0.002 | |
| test2NoPivoting | 0.001 |
| testVoom | 0.033 | |
| testMeanVarianceNoDesignWithColsRowAllMissing | 0 | |
| testDuplicateRows | 0.011 | |
| testInterpolate | 0 | |
| testMeanVarianceNoDesignWithMissing | 0.001 |
| testLimmaMissing | 0.021 | |
| testFdist | 0 | |
| testLimma | 0.015 | |
| testSqueezeVarB | 0.094 | |
| testSqueezeVar | 0.001 | |
| testSqueezeVarWMissing | 0 |
| testInteractionC | 0.001 | |
| test2 | 0.001 | |
| testA | 0 | |
| testB | 0.001 | |
| testInteractionAndRelevel | 0.002 |
| testRunUFEffect | 0.001 | |
| testRunZFEffect | 0.001 | |
| testRunZRQval | 0 | |
| testRunUFZscore | 0 | |
| testRunZFZscore | 0 | |
| testRunUFVar | 0 | |
| testRunURBSV | 0 | |
| testRunZFVar | 0 | |
| testRunZRBSV | 0 |
| testFisherCombinePvaluesB | 0.001 | |
| testFisherCombinePvalues | 0 |
| testRunRandomE | 0 | |
| testRunRandomZ | 0 | |
| testRunFixedE | 0 | |
| testRunFixedQ | 0 | |
| testRunFixedZ | 0 | |
| testRunRandomBSV | 0 | |
| testRunRandomVar | 0 | |
| testRunFixedVar | 0 |
| testdBinom | 0 | |
| testCumHyperGeometricB | 0 | |
| testTrigammaInverse | 0 | |
| testCumHyperGeometric | 0 | |
| testTrigammaInverseB | 0 | |
| testHypergeometric | 0 | |
| testCumHyperGeometricUT | 0 |
| testChooseRandomDeck | 0.021 | |
| testRepeatSubset | 0.238 | |
| testChooserandomInts | 0.008 | |
| testChooserandomWrep | 0.001 | |
| testRandomSubset | 0 | |
| testChooserandomInt | 0.03 | |
| testRepeat | 0.199 |
| testKSTestTwoSample | 0 | |
| testKSTestOneSample | 0 |
| testBig | 0.028 | |
| testAroc | 0 | |
| testArocPvalue | 0.002 |
| testQuantileNormalize | 0 | |
| testQuantileNormalizeWithMissing | 0.001 |
| testMax | 0 | |
| testSumArray | 0 | |
| testFillRangeDown | 0 | |
| testFillRange | 0 | |
| testFillRangeNo | 0 |
| testKW | 0 |
| testSumOfSquaresDoubleMatrixNamed | 0 | |
| testMeans | 0 | |
| testSums | 0 | |
| testMeans2 | 0 | |
| testStandardDeviations | 0 | |
| testSumOfSquaresDoubleMatrixNamedDoubleArrayList | 0 |
| testSingularValueDecomposition | 0.102 |
| testAveragePrecisionB | 0 | |
| testAveragePrecisionWithTie | 0 | |
| testAveragePrecisionNotInOrder | 0 | |
| testAveragePrecision | 0 | |
| testAveragePrecisionBNotInOrder | 0 |
| testBenjaminiYekuteliCut | 0.008 | |
| testBenjaminiHochbergCut | 0.008 | |
| testBenjaminiHochberg | 0.011 | |
| testBenjaminiHochbergM | 0.011 | |
| testBonferroniCut | 0.01 |
| test | 0 | |
| This test require -Dncbi.api.key to be set. | ||
| testB | 0 | |
| This test require -Dncbi.api.key to be set. | ||
| testC | 0 | |
| This test require -Dncbi.api.key to be set. |
| testPersistence | 0.49 | |
| org.xml.sax.SAXParseException; systemId: http://purl.org/dc/elements/1.1/; lineNumber: 9; columnNumber: 3; The element type "p" must be terminated by the matching end-tag "</p>". | ||
| matchIndividuals_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException | 0.645 | |
| testOmitDefinitions2 | 0.023 | |
| testOmitDefinitions3 | 0.017 | |
| testOmitDefinitions4 | 0.719 | |
| testScore | 0.015 | |
| testOmitBadPredicates2 | 0.02 | |
| testOmitBadPredicates | 0.018 | |
| testOmitDefinition | 0.005 | |
| testIndexing | 0.15 | |
| org.xml.sax.SAXParseException; systemId: http://purl.org/dc/elements/1.1/; lineNumber: 9; columnNumber: 3; The element type "p" must be terminated by the matching end-tag "</p>". | ||
| matchClasses_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException | 0.002 | |
| matchResources_whenIndexRaisesJenaException_thenWrapItWithOntologyJenaSearchException | 0.003 | |
| testOmitDefinitions | 0.019 |
| testCacheOntologyToDisk | 0.049 | |
| testHasChanged | 0.004 |
| testGetParentsHasProperPart | 0.034 | |
| testGetChildren | 0.578 | |
| testGetChildrenHasProperPart | 0.012 | |
| testGetParents | 0.219 | |
| testRejectNonEnglish | 0.325 |
| testLoadAndSearch | 7.908 | |
| testWithoutCache | 0.229 |
| testInitializeInBackgroundThread | 0.001 | |
| testCacheOntologyToDisk | 1.951 | |
| testGenericOntologyServiceMem | 0.036 |
[Summary] [Package List] [Test Cases]