Uses of Class
ubic.basecode.ontology.search.OntologySearchException

Packages that use OntologySearchException

Package	Description
ubic.basecode.ontology.jena
ubic.basecode.ontology.jena.search
ubic.basecode.ontology.providers

Uses of OntologySearchException in ubic.basecode.ontology.jena

Methods in ubic.basecode.ontology.jena that throw OntologySearchException

Modifier and Type	Method	Description
Collection<OntologyIndividual>	AbstractOntologyService.findIndividuals(String search, boolean keepObsoletes)
Collection<OntologyResource>	AbstractOntologyService.findResources(String searchString, boolean keepObsoletes)
Collection<OntologyTerm>	AbstractOntologyService.findTerm(String search, boolean keepObsoletes)

Uses of OntologySearchException in ubic.basecode.ontology.jena.search

Subclasses of OntologySearchException in ubic.basecode.ontology.jena.search

Modifier and Type	Class	Description
class	OntologySearchJenaException	Base class for Jena-related ontology search exceptions.
class	RetryWithoutWildcardFailedException	Exception raised when retrying a search without a wildcard still fails.

Methods in ubic.basecode.ontology.jena.search that throw OntologySearchException

Modifier and Type	Method	Description
static com.hp.hpl.jena.util.iterator.ExtendedIterator<OntologySearch.SearchResult<com.hp.hpl.jena.ontology.OntClass>>	OntologySearch.matchClasses(com.hp.hpl.jena.ontology.OntModel model, SearchIndex index, String queryString)	Find classes that match the query string.
static com.hp.hpl.jena.util.iterator.ExtendedIterator<OntologySearch.SearchResult<com.hp.hpl.jena.ontology.Individual>>	OntologySearch.matchIndividuals(com.hp.hpl.jena.ontology.OntModel model, SearchIndex index, String queryString)	Find individuals that match the query string
static com.hp.hpl.jena.util.iterator.ExtendedIterator<OntologySearch.SearchResult<com.hp.hpl.jena.rdf.model.Resource>>	OntologySearch.matchResources(com.hp.hpl.jena.ontology.OntModel model, SearchIndex index, String queryString)	Find OntologyIndividuals and OntologyTerms that match the query string.

Uses of OntologySearchException in ubic.basecode.ontology.providers

Methods in ubic.basecode.ontology.providers that throw OntologySearchException

Modifier and Type	Method	Description
default Collection<OntologyIndividual>	OntologyService.findIndividuals(String search)	Looks for any individuals that match the given search string.
Collection<OntologyIndividual>	OntologyService.findIndividuals(String search, boolean keepObsoletes)	Looks for any individuals that match the given search string.
default Collection<OntologyResource>	OntologyService.findResources(String searchString)	Looks for any resources (terms or individuals) that match the given search string
Collection<OntologyResource>	OntologyService.findResources(String search, boolean keepObsoletes)	Looks for any resources (terms or individuals) that match the given search string
default Collection<OntologyTerm>	OntologyService.findTerm(String search)	Looks for any terms that match the given search string.
Collection<OntologyTerm>	OntologyService.findTerm(String search, boolean keepObsoletes)	Looks for any terms that match the given search string.