UberonOntologyService (baseCode 1.1.15 API)

java.lang.Object
- ubic.basecode.ontology.jena.AbstractOntologyService
- - ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService
  - - ubic.basecode.ontology.providers.UberonOntologyService

All Implemented Interfaces:: OntologyService

public class UberonOntologyService
extends AbstractOntologyMemoryBackedService

Uberon

Author:: paul

Field Summary
- Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
  log

Constructor Summary

Constructors
Constructor Description

UberonOntologyService()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected String`	`getOntologyName()`	The simple getOntologyName() of the ontology.
`protected String`	`getOntologyUrl()`	Defines the location of the ontology eg: MGED

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService
loadModel, loadModelFromStream

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
cancelInitializationThread, closeIndex, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAllURIs, getCacheName, getChildren, getParents, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, loadTermsInNameSpace, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService
findIndividuals, findResources, findTerm, getChildren, getParents

- Constructor Detail
  - UberonOntologyService
```
public UberonOntologyService()
```
- Method Detail
  - getOntologyName
```
protected String getOntologyName()
```
    Description copied from class: AbstractOntologyService
    
    The simple getOntologyName() of the ontology. Used for indexing purposes. (ie this will determine the getOntologyName() of the underlying index for searching the ontology)
    
    Specified by:
    
    getOntologyName in class AbstractOntologyService
  - getOntologyUrl
```
protected String getOntologyUrl()
```
    Description copied from class: AbstractOntologyService
    
    Defines the location of the ontology eg: MGED
    
    Specified by:
    
    getOntologyUrl in class AbstractOntologyService